Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01768 ATGGCTTTCCTCCTCCCTCTACTCTTCCTTTCCCTTGCCTCCTCCGCCGCTGCCTGTGATCGTTGTCTTCATCACGCCAAAGCCGCCTTCTACCAGGTCGAGTCCGACGGTGAACTTAGAGGCGCCTGTGGCTATGGCAATCTCACCTTGGGGCTCTCAAATGGCTACTTCTCGGCTATCACAGCTACTCTTTACGGCCACGGTGCTGGTTGTGGCACCTGCTTTCGTGTAAGGTGTAAAAACGAGGCAATGTGCAACAAAGAAGGCACCCAGATTGTTGTAACGGATGGCAATGAGAGCTCTCAAACAGGCCTTGTAATTAGCAAGAAGGCTTTTAGTGAAATGGCTTTGAGTGGCAAAGGGGAATTGCTTATTATTGAAGGAGTTGTGGACGTTGAATTCAAAAGGGTTCCTTGTGAGCACAAAGACAAGAACTTGATGGTTAGAGTGGAAGAGATGAGCAAATATCCCACTTATTTAGCCATCAAATTGCTTTACCAAGGTGGCCAAACCGAAATAGCAAGCATAGAGATCGCTAAGGTGGGTGAATCGAATTGGGCTCCGATGGCTCGCAACTATGGAGCTGTTTGGAACTCGAAACATCACGTACCGGATGGACCATTGCACTTGCGGTTTATGGTGACTTCTGGGTTTGATAAGAAGTGGATCGAGACAAAGTCTGTGCTTCCCATTGATTGGAGACATGGGCAAATTTACGACACTGGAGTTCAAATCAACGACCTGGCTAAAGAGAGTTGTTCAAATGATCAGTGTGCCCATCAGCATTGGGCTTAG 795 47.92 MAFLLPLLFLSLASSAAACDRCLHHAKAAFYQVESDGELRGACGYGNLTLGLSNGYFSAITATLYGHGAGCGTCFRVRCKNEAMCNKEGTQIVVTDGNESSQTGLVISKKAFSEMALSGKGELLIIEGVVDVEFKRVPCEHKDKNLMVRVEEMSKYPTYLAIKLLYQGGQTEIASIEIAKVGESNWAPMARNYGAVWNSKHHVPDGPLHLRFMVTSGFDKKWIETKSVLPIDWRHGQIYDTGVQINDLAKESCSNDQCAHQHWA 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12451304 12453192 + CmoCh11G017680.1 Cmo11g01768 392387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01768 264 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Cmo11g01768 264 Pfam Lytic transglycolase 59 122 IPR009009 -
Cmo11g01768 264 PANTHER EXPANSIN-LIKE A1-RELATED 5 258 - -
Cmo11g01768 264 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Cmo11g01768 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cmo11g01768 264 PANTHER EXPANSIN-B3 5 258 - -
Cmo11g01768 264 Pfam Expansin C-terminal domain 147 230 IPR007117 -
Cmo11g01768 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cmo11g01768 264 Gene3D - 141 246 IPR036749 -
Cmo11g01768 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cmo11g01768 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cmo11g01768 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cmo11g01768 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cmo11g01768 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cmo11g01768 264 Gene3D - 10 140 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01768 Cmo-Chr11:12451304 Cmo19g00795 Cmo-Chr19:7939489 1.58E-135 dispersed
Cmo11g01767 Cmo-Chr11:12448437 Cmo11g01768 Cmo-Chr11:12451304 4.38E-69 tandem
Cmo11g01768 Cmo-Chr11:12451304 Cmo11g01769 Cmo-Chr11:12454951 2.90E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01768 - - cmax:111486501 436.032