Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01783 ATGAGGATGATGCAGACAAAGCGAAGATACCATACCGACGATTCCTCAAACCGTATGGTTATGTCGAGTAATGTTACAACCTTCTTAAGACCATCAACCGCGGTCCGAACCAACAAATCTAATGGGGATTCTAAACCATCCCTATTCAAAACTCCGCCACTAAGGACTACAACACAAGTATCATCGCCCACAAAGACGGCTCGAGTAGAGATGTTAAAGAATAAATTCAGTAATACTATTTCAAAAGCTCAACAAGCACTTCAGTCCAAGCATAAGATTGCTCGTAAGGTTGCCGTTCCAAAGAAATTACCGGAACAAAAACGAGCTGCTCCAAATGTTGTCGTTCCAAATGGTCAGTGTTGGTTTTCTTTTTCGAGGTTGATTTTGCTGATCGATCTGCGTGTAAGGGATATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTGAGGGCGGTGGCGATGGTGAAGAAGGTGGAGTTGGTGTTTCTATCAATATTCGTTGCTCTAATGGTTCGAAATTTTCGGTGACGACGAGTCTTGATTCCACGGTTGGGACATTTAAATCAATTCTTGCTCAGAATTGTGATATTCCAGCTGATCAACAGCGATTGATCTACAAGGGTCGCATCTTGAAGGACGATCAAACCTTAGTCAGTTATGGGTTACAGGCAGATCATACTATTCACCTGGTTCGTGGGTTTCCCCAAGGTTCGTCAGCACCGTCTGCACCTGCTTCTAATGATAATAGTAGAAGTTCTGAGACTGCTACTGCTCCCGGTGTTACAAGAGGTGTTGGTTCCACTGGGAGTGATGCTTTTGGAAATGCTGGCCTTGGTGCATCTCTGTTTCCTGGATTAGGTTTCAATTCTCTCGGTGGGGGTGGAGCTGGACTTCCCGAGTTTGAACAAGTGCAACAGCAGTTGACTCAGAATCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATCCAGAACTTGATGAATAACCCTGACATGATGCGGAGCTTAATTATGAGCAATCCTCAGATGAGGGATATTATTGACAGGAACCCCGAGCTTGCGCATATACTCAATGACCCTGGTATTCTTCGGCAGACATTAGAGGCTGCAAGGAATCCAGAACTCATGAGAGAGATGATGAGAAACACTGACAGAGCGATGAGTAACATCGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGCATGTATGAGAATGTTCAGGAGCCATTTCTGAATGCAACAACGATGACTGGAAATGCTGGGAATGATTCGAGTTCAAACCCATTTGCAGCTCTCCTGGCAAACCAAGGGGGTGCACAAGCTAGGAACGAGTCTAATAATTCTTCTACTACAGGATCGGAAACAACCGAAAATGCTGCTCCGAATACGAATCCGCTTCCTAATCCCTGGGGAGGAACTCAGACAACAACCACACAGCCTACTCCAGTAGGTGATGCAAGGCCTGGTGTTGGGGGTTTAGGAGGGGCTGGTCGCACAAATGTGGAACGTTCTGTTGGTGGCACGCCGGATGTAGCTCAGTTGAATCAGTTTCTGCAGAACCCGGCTATTTCACAGATGATGCAGAGCCTGCTCTCCAATCCTCAGTATATGAATCAAATCCTCAATCTCAACCCACAGACGCGGGGTATGGTTGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCCCGAGTTCATTCGCCAATTAACTAATCCTGAGATGATACAGCAAATGCTATCAATTCAGCAGTCACTTTTCTCGACCTTAAATCGACAGCCATCATCTCAAGATTCTGCTCAATCGGACACTGCTGCAGGTGTTCCTAACACCGCTGGATTGGAGATGTTGATGAGCCTGTTCGGTGGGCTTGGCGCCGGTGGGTTGGCTACTCCGAACAATCCGAACGTGCCCCCAGAAGAACTATATGCAACTCAACTTTCACAGCTCCAAGAGATGGGTTTTTTCGACACCCAAGAGAACATCAGAGCTCTACGCGCTACGTCCGGGAACGTTCATGCTGCTGTCGAGCGACTGCTGGGAAATCTCGGGCAGTAA 2064 46.71 MRMMQTKRRYHTDDSSNRMVMSSNVTTFLRPSTAVRTNKSNGDSKPSLFKTPPLRTTTQVSSPTKTARVEMLKNKFSNTISKAQQALQSKHKIARKVAVPKKLPEQKRAAPNVVVPNGQCWFSFSRLILLIDLRVRDMGADGDSSEHRVEGGGDGEEGGVGVSINIRCSNGSKFSVTTSLDSTVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHLVRGFPQGSSAPSAPASNDNSRSSETATAPGVTRGVGSTGSDAFGNAGLGASLFPGLGFNSLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDMMRSLIMSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNAGNDSSSNPFAALLANQGGAQARNESNNSSTTGSETTENAAPNTNPLPNPWGGTQTTTTQPTPVGDARPGVGGLGGAGRTNVERSVGGTPDVAQLNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQTRGMVDMNPQLREMMQNPEFIRQLTNPEMIQQMLSIQQSLFSTLNRQPSSQDSAQSDTAAGVPNTAGLEMLMSLFGGLGAGGLATPNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQ 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12538590 12544368 - CmoCh11G017830.1 Cmo11g01783 392402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01783 687 Gene3D - 161 247 - -
Cmo11g01783 687 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 640 684 IPR015940 -
Cmo11g01783 687 Gene3D - 627 686 - -
Cmo11g01783 687 Pfam UBA/TS-N domain 645 681 IPR015940 -
Cmo11g01783 687 SUPERFAMILY Ubiquitin-like 161 250 IPR029071 -
Cmo11g01783 687 MobiDBLite consensus disorder prediction 438 501 - -
Cmo11g01783 687 ProSiteProfiles Ubiquitin domain profile. 162 237 IPR000626 GO:0005515
Cmo11g01783 687 MobiDBLite consensus disorder prediction 233 266 - -
Cmo11g01783 687 CDD UBA_PLICs 645 683 - -
Cmo11g01783 687 Pfam Ubiquitin family 164 231 IPR000626 GO:0005515
Cmo11g01783 687 SUPERFAMILY UBA-like 641 683 IPR009060 GO:0005515
Cmo11g01783 687 CDD Ubl_Dsk2p_like 163 234 - -
Cmo11g01783 687 SMART ubq_7 162 233 IPR000626 GO:0005515
Cmo11g01783 687 MobiDBLite consensus disorder prediction 438 485 - -
Cmo11g01783 687 MobiDBLite consensus disorder prediction 35 64 - -
Cmo11g01783 687 PANTHER UBIQUILIN 138 687 - -
Cmo11g01783 687 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 138 687 - -
Cmo11g01783 687 SMART CBM 510 542 IPR006636 -
Cmo11g01783 687 SMART CBM 546 581 IPR006636 -
Cmo11g01783 687 SMART CBM 284 328 IPR006636 -
Cmo11g01783 687 SMART CBM 341 380 IPR006636 -
Cmo11g01783 687 MobiDBLite consensus disorder prediction 239 264 - -
Cmo11g01783 687 SMART uba_6 645 683 IPR015940 -
Cmo11g01783 687 Gene3D - 336 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01783 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 871.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01783 Cmo19g00813 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00142 Cmo-Chr6:762975 Cmo11g01783 Cmo-Chr11:12538590 0 dispersed
Cmo11g01783 Cmo-Chr11:12538590 Cmo16g01321 Cmo-Chr16:9374449 0 dispersed
Cmo11g01783 Cmo-Chr11:12538590 Cmo19g00813 Cmo-Chr19:8041502 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01783 Cmo_Chr11 FPKM 1.204751 1.329695 9.815342 10.607089 10.859586 14.741236 13.999907 7.641977 6.892051 6.745707