Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01785 ATGGGGATTTGTTGGGGTTCTCCTGTTGGTAATCATACCCCTAATACCACTGGACATCTCAGTTCAGTGGTATCCCAGACAACATCATCAACGGTCAGCAACATCTCGAAGAATAGTAATTTCTCGGTAGCAAGTGGAGATGAAGCTTTTCCAAATGGCCAGATTTTGCCCTCTCCAAATTTGAGAGAGTACAGTTTGGCAGAGCTCAAAGCTGCAACCAAAAACTTCAGAGCTGAGGCAATGCTTGGTGAAGGAGGTTTTGGCAAAGTTTACAAAGGTTGGCTCGAGGAGAAGGGCCATGGAAAGAAGGGAAATTCGATGGTTATTGCGGTCAAAAAGTTGAAATCTGATAGCTTGCAAGGAATTGAGGAGTGGCAGTCAGAAGTGGGCTTCTTAGGAAGACTTTCTCACCCAAATCTGGTGAAGCTGCTGGGTTACTGTTGGGAGGATCACGAGCTACTCCTCACTTATGAGTTCATGCAAAAGGGAAGTTTGGAAAACCATCTGTTTGGAAGGGGCTCAGCAGTTACACCACTAGAGTGGGATACTCGGCTTAAGATCGCCATAGGTGCCGCTCGAGGGCTGGCGTTCTTGCACACATCGGACAAGCAAGTAATTTATAGAGATTTCAAGGCTTCTAATATTCTGCTTGATGGGTCTTATACACCAAAGCTATCAGACTTTGGTTTGGCAAAATTGGGTCCTTCTGAAAGTAAATCTCATTTGTCGACTCGAGTTATGGGCACTAATGGTTATGCTGCCCCGGAGTATATATCCACAGGACATTTGTATGTCAAGAGTGACGTGTATGGTTTTGGAGTTGTACTGATCGAGATGTTAACGGGTTTACGTGCACTCGACGAAAACCGTCCAACCGGTCACGAAAACTTGGTGGATTGGATAAAGCCATACTTATCAGAGAGGAGGAAGCTGAAAAACGTGATGGACTTTCGGTTGGAAGGCAAGTATCCATCGAGATCAGCATTCCAAGTGGCTCAGCTTGCTCTCCAATGTATTGAGCAAGAACAGAAGAACAGACCAGCAATGAACGAGGTTGTCGAGACACTGGAACGGATCGAAGCTATGAACGACCGACCGAATGAGCCTAGAAACCGTTCGCCCCGCCAGCCTCTTCACCATAGCTCTCCACTTCACGTGAAGCAATATGGAGTCCATGCTAATCAAACATCACCCAGTCCCGCGCTGGCGAATGAAGACGAAATGAATCTTGAAGATACTGCCTTCCTTCTACTCTGA 1257 46.38 MGICWGSPVGNHTPNTTGHLSSVVSQTTSSTVSNISKNSNFSVASGDEAFPNGQILPSPNLREYSLAELKAATKNFRAEAMLGEGGFGKVYKGWLEEKGHGKKGNSMVIAVKKLKSDSLQGIEEWQSEVGFLGRLSHPNLVKLLGYCWEDHELLLTYEFMQKGSLENHLFGRGSAVTPLEWDTRLKIAIGAARGLAFLHTSDKQVIYRDFKASNILLDGSYTPKLSDFGLAKLGPSESKSHLSTRVMGTNGYAAPEYISTGHLYVKSDVYGFGVVLIEMLTGLRALDENRPTGHENLVDWIKPYLSERRKLKNVMDFRLEGKYPSRSAFQVAQLALQCIEQEQKNRPAMNEVVETLERIEAMNDRPNEPRNRSPRQPLHHSSPLHVKQYGVHANQTSPSPALANEDEMNLEDTAFLLL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12551860 12556496 - CmoCh11G017850.1 Cmo11g01785 392404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01785 418 ProSitePatterns Protein kinases ATP-binding region signature. 82 113 IPR017441 GO:0005524
Cmo11g01785 418 CDD STKc_IRAK 82 359 - -
Cmo11g01785 418 MobiDBLite consensus disorder prediction 361 382 - -
Cmo11g01785 418 Gene3D Phosphorylase Kinase; domain 1 60 159 - -
Cmo11g01785 418 ProSiteProfiles Protein kinase domain profile. 76 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01785 418 Gene3D Transferase(Phosphotransferase) domain 1 160 376 - -
Cmo11g01785 418 MobiDBLite consensus disorder prediction 1 21 - -
Cmo11g01785 418 SUPERFAMILY Protein kinase-like (PK-like) 60 384 IPR011009 -
Cmo11g01785 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cmo11g01785 418 PANTHER OS01G0588500 PROTEIN-RELATED 21 372 - -
Cmo11g01785 418 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 21 372 - -
Cmo11g01785 418 MobiDBLite consensus disorder prediction 361 375 - -
Cmo11g01785 418 Pfam Protein tyrosine and serine/threonine kinase 79 356 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00150 Cmo-Chr6:807584 Cmo11g01785 Cmo-Chr11:12551860 3.80E-151 dispersed
Cmo11g01785 Cmo-Chr11:12551860 Cmo12g00617 Cmo-Chr12:3853610 6.00E-146 dispersed
Cmo11g01785 Cmo-Chr11:12551860 Cmo16g01331 Cmo-Chr16:9419813 4.78E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74693 PF07714 PK_Tyr_Ser-Thr 8.70E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01785 - - csv:101210490 706.442