Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01786 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTAAAGGAACAGCAAGAACAAGAGGATGAAGAGCAGAAGCAACAGAATCACAACAAACCCAAGCGAATCGACCGCTCCTCCGCAATTCCCAACCCTAATTACGCTTCTTCTACTCCCTTGCGGCGATCTACTCGCCGGAATCCCAACCCCGACGGACTCACTCCCGATGACCACGACGATGCCGAATACAACCAAGAATTGGCCAGGAACCGCCGCGAGAGGAAACTCAAGCTCGTTCTCAGATTGCACTCTCAGAAACCTCCCGTCAATTCGTCCTCTCTCAATTCCGGTGGTTCCGATTCTAATGCGGAGGGGGACGATAATGTTGCGTCGGCTAATAAGAAGCGGAAGATCGGTTCAATTGCGGAGGGATCTAGGATCCAAGACTCCGAGAAGGGTGAAAAGTCCATTTCTACTACAAACCCATCGGAAACCCTTCAAGGGTCGCATATGGATTCGGGACCCTTGACGCTTTTACCTGATAAGAAGCTTTTACTCTTCATCCTCGACAGGCTTCAAAAGAAGGATATCTATGGGGTGTTTTCCGAACCAGTGGACCCCAACGAGCTTCCAGACTATCATGAAATTATAGAGCATCCGATGGATTTTGGGACTGTTCGTGGGAAGCTTACTTCTGGAGCCTATACCAGTTTGGAACAGTTTGAAAAAGACATTCTCTTAATCAGTTCAAATGCAATGCAATATAATGCCCCAGATACCATATATTTTCGGCAGGCACGTACCATACAAGAGTTAGCAAAAAAGAATTTTAAGAACCTGAGACAAGATAGTGATGAGAATGAACCAGAGCCTAAAGTAGCAAGAAGAGGTAGACCACCGACCAAGCATTTGAAAAAACCATTGGGTCGACCTTCCTTGGAACGTGCTGGTTCCGAGTTTTCCCCGGATGCCACTCTTGCTACTGGTGGTGAAAACACGAATCGGTCGAACGATTTGAGGAAAGGATTTCATCATTTCGAAAAAACTAGTTTAGCTGATTTTTCTGGCAGATTCTCCTTTTCTTCCAATAGTGATGCTGCTGCATTTAACTTGTTTAACCAGAGCAGAATTGATAGAAGCGAGGATATTACAGGTTCTGGACTGAGAATTAATTCAGTGAGACAGGGGAAAAGACCAATTGTCTCTGATGAGAATAGGCGTAACACATATAAGCAATTTCAAGCGGCAGCTGCTTTGCTAGAACCCTCTGTGTTGAATACATTTGATAGAGAGAGGAAGCTTTTAATGCCAGTCGGACTTTTCTTGGAGCATGCTTATGCACGAAGCCTTGCCCGATTCGCTGCAGATCTCGGATCTGTAGCTTGGAGAGTTGCTTCAAAGAAGATCGAAAGATCTTTACCAGCAGGTTCAGGTTTTGGTCCTGGATGGGTTGTAGAAAATGATACCACACCAAAGAGAGTGTTTCTACCTCAAGCTGAACTCTGTCAAATGTCAACATTACATCCCTATGGTGCAGATGTAAAGCCTCTTGCTCCTGAACAAAAGGGCGTTCGATCATCCGACAACTCCGAAGCTGATACTTCATCTAAGACACACGACTACGAGCCTTCTCATGCCCCCAGTTCAGATGGCCATTTAAGTAGGCCTCCCACTGAGTTTGCTGCAACTTCATCATCACCGTCGAGTACTCAACGATCTTCTGAGCCGTGCAGGGGACAGGCTGAAGGAGTTGAAGGATTGAATCCCAGTAGTGATTATAATGTATTGGAACGTAGTATTCCAACCTCAAGGCCTTCATTTCAGAAACAACGCGCGACTCCAACCATCCGCCCTGGTATGAATGGATTCAATGGTACTTATGCCTTTGATCTCTCTGCTCACAGGGGGAAACTAACAGGAGCATCCGAGCCTGCTGATGAACAACCTCAGTCATCTCGAACGCTCGAGACAACGACCTCCAGGACTAATGCTAACTTCATCCATCCAGCAACAGATCCCAGTACAACAAACTCTTCCAGTTCATTGCCCGGGTCGGGGAACGAGGCTCATTCGCAAGGGCCATCACCAGCAGAAAAAACAACAACAATACACCACAAACCGGAATCAGTTCCCCCGGACGTGAACGCGAGATTTAATTCTCCAGGATCTCCTAGCTGTAGTAAGGTGGAGTGTGGTAACCCTGATTTAGTATTGCAGCTATGA 2235 46.67 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEDEEQKQQNHNKPKRIDRSSAIPNPNYASSTPLRRSTRRNPNPDGLTPDDHDDAEYNQELARNRRERKLKLVLRLHSQKPPVNSSSLNSGGSDSNAEGDDNVASANKKRKIGSIAEGSRIQDSEKGEKSISTTNPSETLQGSHMDSGPLTLLPDKKLLLFILDRLQKKDIYGVFSEPVDPNELPDYHEIIEHPMDFGTVRGKLTSGAYTSLEQFEKDILLISSNAMQYNAPDTIYFRQARTIQELAKKNFKNLRQDSDENEPEPKVARRGRPPTKHLKKPLGRPSLERAGSEFSPDATLATGGENTNRSNDLRKGFHHFEKTSLADFSGRFSFSSNSDAAAFNLFNQSRIDRSEDITGSGLRINSVRQGKRPIVSDENRRNTYKQFQAAAALLEPSVLNTFDRERKLLMPVGLFLEHAYARSLARFAADLGSVAWRVASKKIERSLPAGSGFGPGWVVENDTTPKRVFLPQAELCQMSTLHPYGADVKPLAPEQKGVRSSDNSEADTSSKTHDYEPSHAPSSDGHLSRPPTEFAATSSSPSSTQRSSEPCRGQAEGVEGLNPSSDYNVLERSIPTSRPSFQKQRATPTIRPGMNGFNGTYAFDLSAHRGKLTGASEPADEQPQSSRTLETTTSRTNANFIHPATDPSTTNSSSSLPGSGNEAHSQGPSPAEKTTTIHHKPESVPPDVNARFNSPGSPSCSKVECGNPDLVLQL 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12559458 12564640 - CmoCh11G017860.1 Cmo11g01786 392405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01786 744 MobiDBLite consensus disorder prediction 282 301 - -
Cmo11g01786 744 ProSitePatterns Bromodomain signature. 203 259 IPR018359 -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 133 157 - -
Cmo11g01786 744 ProSiteProfiles Bromodomain profile. 197 267 IPR001487 GO:0005515
Cmo11g01786 744 SMART bromo_6 178 286 IPR001487 GO:0005515
Cmo11g01786 744 MobiDBLite consensus disorder prediction 1 92 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 596 624 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 158 176 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 648 703 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 109 132 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 17 48 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 536 550 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 516 626 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 75 92 - -
Cmo11g01786 744 Coils Coil 17 42 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 282 343 - -
Cmo11g01786 744 Pfam Bromodomain 192 271 IPR001487 GO:0005515
Cmo11g01786 744 PRINTS Bromodomain signature 200 213 IPR001487 GO:0005515
Cmo11g01786 744 PRINTS Bromodomain signature 214 230 IPR001487 GO:0005515
Cmo11g01786 744 PRINTS Bromodomain signature 230 248 IPR001487 GO:0005515
Cmo11g01786 744 PRINTS Bromodomain signature 248 267 IPR001487 GO:0005515
Cmo11g01786 744 CDD Bromodomain 185 279 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 1 16 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 638 744 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 106 178 - -
Cmo11g01786 744 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 744 - -
Cmo11g01786 744 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 744 - -
Cmo11g01786 744 MobiDBLite consensus disorder prediction 562 581 - -
Cmo11g01786 744 SUPERFAMILY Bromodomain 176 291 IPR036427 GO:0005515
Cmo11g01786 744 MobiDBLite consensus disorder prediction 53 74 - -
Cmo11g01786 744 Gene3D - 181 300 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01786 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1076.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01786 Cmo19g00818 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01175 Cmo-Chr1:9581001 Cmo11g01786 Cmo-Chr11:12559458 3.69E-80 dispersed
Cmo01g02077 Cmo-Chr1:14463536 Cmo11g01786 Cmo-Chr11:12559458 1.87E-89 dispersed
Cmo09g00956 Cmo-Chr9:5032917 Cmo11g01786 Cmo-Chr11:12559458 1.23E-79 dispersed
Cmo11g01786 Cmo-Chr11:12559458 Cmo07g00146 Cmo-Chr7:800469 6.56E-14 dispersed
Cmo11g01786 Cmo-Chr11:12559458 Cmo19g00818 Cmo-Chr19:8058986 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01786 Cmo_Chr11 FPKM 2.524723 1.971267 25.322083 24.650007 5.526549 5.380247 5.903777 46.431553 47.89011 53.995098