Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01788 ATGGCATCGGCGCAGAACTCAGCGCCGAATGTGGATCTCTTTGATGCATACTTTCGACGTGCCGATTTGGACCGCGATGGTCGAATTAGTGGTGCTGAAGCGGTTGCCTTCTTTCAAGGGTCTGGATTGCCCAAACAGGTTCTTGCTCAGATTTGGGCACTTTCGGACCCGAGACAGATTGGTTTTCTCGGTCGGGCGGAGTTTAATAATGCCCTTAGGCTGGTCACTGTAGCACAGAGTAAGAGGGAACTAACCCCTGAGATTGTAAAAGCAGCATTGTTTAGCCCAGCTGCATCTAAAATACCTGCACCACAAATAAATTTCAATACCCCGCCTGCATCTCAGTTCAATCCTACTCCAGCGTTACCTAAACCTCAGACTGGCATTGGTACTCCAACTCCCTCACAAGGCTCTGGGTTGGAATCACAGGTTGCTCGAAGTGTTACTACGACTGCTTCACCGGTTCCTTCTAGAGAGAATCAATCTGTAAGGCCTCCGTTGGCCACTTCAAATTCTGCTTTCCATCCAGTGCAGGGATTTTCAGGAGTAGGTCCCGTGTCGGGGCCACCTCCAACAAATTCTAGCATCTCGAATGATTGGGTCAGTGACCATGCTGGTGGAGTTCAGGGGACACCTTCACAACCTCCGAACATAGGATTCAGTCCTGCTGGAACACAGGTTGGATTTGGGCAATCAAGTGCAGGACTAATAACTTCTCTACCCCCTAGGCCTCAGACTGCTCCTGGAATAAAGTCGGCTACACCATCACCTGTGGATAGTAATGTGCAAGGTTTTTCTGGAAATGGGATTGCTTCTGGATCATATTTTGGAGGAGGGCACTTTGCTGCAAGTTCTGTTCCCTCAAAACAAGATGTCCCCTCGGATAAATTGTCGACTGGCAATATCAGTTCTACATCAGCCACTGTTCCTGTACCTTCTGCTACACAACCAATAGTTAGAGCAGGTTCCCTTGATTCTTTGCAAAATTCATTTATGAAACCACCTCTTGCTAATCAGCCTCCACGGAACCAGCCACTAGGGAAGCCCAATCAACAGAGCATATCGCACCCTGCTTCCTCTGGATTATCAACAGGATCTCAGAACTCTGTTTCTGGTCAATCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACTAAAGTTTTTGTTGTGGTGGATAAAGATAGAGATGGAAAAATTACCGGTGAAGAAGCACGCAATTTGTTCTTGAGTTGGAGACTGCCAAGAGAGGTTTTAAAGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTCTATTTGTTGGAGCGACATAGAGAAGGGCACATTCTTCCTGCTATGCTTCCTAGCAACGTCGTGTTTGATTTTTCCAGCAATGGTCATCCTGCAACTCCGGCTGCATCTAACTATAGCAATGCAGCTTGGAGACCTACAGCTGGTTACCAACAGCACCAAGGGGTTCCTGGGTCTGGTAATGTGCATGGAGCTCCTGTAGTTGGAGTACAACCGCCTACACCTGCTGCTGCCTCCCCGGTTGAGGATGAGCCACAGTCCAATAAGCCAAAATCAAAGGTTCCTGTGCTGGAGAAAAATCTTGTTAGTCAACTTAGTACAGAGGAGCAGAACTCCCTCAACTCAAAGTTCCAAGAAGCAGCAGATGCGGAGAAAAAGGCACCTCATTTCCTTCTAATCCATAATATCAGTTGCTCTGTTATTAAATACTTTATGTTTACTACTGCTTTTGTGATTTGTCTGTCACTCATACTTCGACACATCTTGATTTGTTCAATGAAGGTTGAAGAATTGGAGAAGGAAATTTCGGAATCTAGACAGAAAATTGAGTATTATCGTACTAAAATGCAAGAACTTGTCTTGTACAAGAGCAGATGTGACAATCGGCTGAATGAAATATCTGAAAGAGTGTCTTCAGAAAAACGTGAGGTAGAGTCCCTTGCTAAGAAATATGAAGAGAAATACAAACAATCTGGTGATGTAGCCTCCAGATTAACCGTTGAAGAAGCTACATTCCGTGATATACAGGAGAAGAAGATGGAACTGTATCATGCGATTGTGAAGATGGAAGAAGATGTTAGTGAAGATGGCATTATTCAGGTTCGTGCTGATCGTATTCAAGCAGATATAGAAGAATTAGTGAAATCTCTCAATGAACGCTGCAAGAGTTATGGTTTGCGTGCGAAACCAATAACTCTGAGTGAACTACCTTTCGGCTGGCAACCTGGCATCCAAGTGGGAGCTGCTGACTGGGACGAGGATTGGGATAAATTTGAGGAGGAAGGTTTCACTGTTGTCAAGGAACTCACTCTTGATGTGCAGAATGTCATAGCACCTCCAAAGCAGAAATCCAAATCTGAGTCGGTGCAGAAAGAACAAGGTTCAGCCATTGACAGCCAAAAAGTTACACCTGCACCAGATGTTGATACCAAGGACGGAGGTTCTACACCTGATGCTGATTCCAAGGGAGAGAAACCTCCTAGTATGGATGAAAAAGCTGTTGAAAATGGTTCCGTACACGATAATAAAAGTGAAGATGGATCAGCCAGAAGTGCTCCTAACAGCCCCTTTGCAAGTAGTGTTATTGAAAGTCCCAAGGAACACAGGGATTCCAATTTTGGGAAGGCTGCTGGCTTTGATGCTTCACCCCGTGACAAGGACACTCAATATAGGGATTCCAATCTTGGGAAGGCTGCTGGCTTTGATACTTCACCCCGTGATAAGGACGCACTAAGTGATCATGGAGGTGCGGGATCTGTGTTTTCTGGTGACAAGAGCTATGACGAACCAGCTTGGGGAACGTTCGATATGAATGACGATGTTGACTCTGTTTGGGGCTTCAACGCTGGAGGTTCCACTAAGACTGACAATGATGTTAACCGAGACAACTATTTTTTCGATTCTGGGGACTTGGGCTTGAATCCTATAAGAACAGAACCATTCCAGGCCAAGAGAAGTACATTTGCTTTCGATGAGTCTGTTCCTAGCACCCCACTCTTCAACTCGGGCAATTCTCCGAACAATTACCACGAGGGATCAGAACCAAGTTTTGAGAGCTTCTCAAGGTTTGATTCTTCCAGTGTGCATGAAGGTGGTTTCCCTCCGCGAGACACATTTGCACGATTCGACTCAATGCGCAGCAGTAAAGACTTCGACCAGGGCCCTGGATTCTCACCATTTGGTCAGTTTGATACATCACGCAGCAGTAGAGACTTTGACCAGGGTGGATCCTCATTGACGCGATTCGATTCAATGCGCAGCAGTAAAGACTTTGATCAGGGATTCCCTTCATTCTCACGATTCGATTCAATGCGCAGCAGCAAAGACTTTGATCAGGAATTCCCTACATTGTCACGGTTCGATTCGATGCATAGCAGCAAAGATTTTGATCAAGGCCACGGATTTCCATCATTCGATGATGCAGACTTCGGATCAACAGGGCCGTTTCGGGCATCCCTGGATAATCAAACTCCAAAGAAAGGATCAGATAACTGGAGTGCATTTTAG 3564 45.85 MASAQNSAPNVDLFDAYFRRADLDRDGRISGAEAVAFFQGSGLPKQVLAQIWALSDPRQIGFLGRAEFNNALRLVTVAQSKRELTPEIVKAALFSPAASKIPAPQINFNTPPASQFNPTPALPKPQTGIGTPTPSQGSGLESQVARSVTTTASPVPSRENQSVRPPLATSNSAFHPVQGFSGVGPVSGPPPTNSSISNDWVSDHAGGVQGTPSQPPNIGFSPAGTQVGFGQSSAGLITSLPPRPQTAPGIKSATPSPVDSNVQGFSGNGIASGSYFGGGHFAASSVPSKQDVPSDKLSTGNISSTSATVPVPSATQPIVRAGSLDSLQNSFMKPPLANQPPRNQPLGKPNQQSISHPASSGLSTGSQNSVSGQSQRPWPRMTQTDVQKYTKVFVVVDKDRDGKITGEEARNLFLSWRLPREVLKQVWDLSDQDNDSMLSVREFCIALYLLERHREGHILPAMLPSNVVFDFSSNGHPATPAASNYSNAAWRPTAGYQQHQGVPGSGNVHGAPVVGVQPPTPAAASPVEDEPQSNKPKSKVPVLEKNLVSQLSTEEQNSLNSKFQEAADAEKKAPHFLLIHNISCSVIKYFMFTTAFVICLSLILRHILICSMKVEELEKEISESRQKIEYYRTKMQELVLYKSRCDNRLNEISERVSSEKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYHAIVKMEEDVSEDGIIQVRADRIQADIEELVKSLNERCKSYGLRAKPITLSELPFGWQPGIQVGAADWDEDWDKFEEEGFTVVKELTLDVQNVIAPPKQKSKSESVQKEQGSAIDSQKVTPAPDVDTKDGGSTPDADSKGEKPPSMDEKAVENGSVHDNKSEDGSARSAPNSPFASSVIESPKEHRDSNFGKAAGFDASPRDKDTQYRDSNLGKAAGFDTSPRDKDALSDHGGAGSVFSGDKSYDEPAWGTFDMNDDVDSVWGFNAGGSTKTDNDVNRDNYFFDSGDLGLNPIRTEPFQAKRSTFAFDESVPSTPLFNSGNSPNNYHEGSEPSFESFSRFDSSSVHEGGFPPRDTFARFDSMRSSKDFDQGPGFSPFGQFDTSRSSRDFDQGGSSLTRFDSMRSSKDFDQGFPSFSRFDSMRSSKDFDQEFPTLSRFDSMHSSKDFDQGHGFPSFDDADFGSTGPFRASLDNQTPKKGSDNWSAF 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12574035 12583011 + CmoCh11G017880.1 Cmo11g01788 392407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 249 265 - -
Cmo11g01788 1187 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 1015 1126 - -
Cmo11g01788 1187 Gene3D - 366 471 - -
Cmo11g01788 1187 SUPERFAMILY EF-hand 10 88 IPR011992 -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 105 166 - -
Cmo11g01788 1187 SMART eh_3 2 98 IPR000261 GO:0005515
Cmo11g01788 1187 SMART eh_3 377 473 IPR000261 GO:0005515
Cmo11g01788 1187 ProSiteProfiles EH domain profile. 385 468 IPR000261 GO:0005515
Cmo11g01788 1187 Pfam EF hand 15 31 IPR002048 GO:0005509
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 287 316 - -
Cmo11g01788 1187 SMART efh_1 388 416 IPR002048 GO:0005509
Cmo11g01788 1187 SMART efh_1 422 450 IPR002048 GO:0005509
Cmo11g01788 1187 SMART efh_1 13 41 IPR002048 GO:0005509
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 797 819 - -
Cmo11g01788 1187 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Cmo11g01788 1187 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1114 1187 - -
Cmo11g01788 1187 SUPERFAMILY EF-hand 375 468 IPR011992 -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 1078 1122 - -
Cmo11g01788 1187 Coils Coil 649 676 - -
Cmo11g01788 1187 CDD EH 14 80 IPR000261 GO:0005515
Cmo11g01788 1187 PANTHER EH DOMAIN 1114 1187 - -
Cmo11g01788 1187 PANTHER EH DOMAIN 8 573 - -
Cmo11g01788 1187 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Cmo11g01788 1187 ProSiteProfiles EF-hand calcium-binding domain profile. 421 453 IPR002048 GO:0005509
Cmo11g01788 1187 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 613 1083 - -
Cmo11g01788 1187 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 8 573 - -
Cmo11g01788 1187 PANTHER EH DOMAIN 613 1083 - -
Cmo11g01788 1187 CDD Prefoldin 614 734 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 328 383 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 797 944 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 832 866 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 245 265 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 284 316 - -
Cmo11g01788 1187 Coils Coil 614 634 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 515 540 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 1150 1187 - -
Cmo11g01788 1187 Gene3D - 7 104 - -
Cmo11g01788 1187 CDD EH 389 455 IPR000261 GO:0005515
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 1015 1045 - -
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 882 911 - -
Cmo11g01788 1187 Pfam Cytoskeletal-regulatory complex EF hand 379 451 IPR000261 GO:0005515
Cmo11g01788 1187 MobiDBLite consensus disorder prediction 1168 1187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01788 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101215882 1768.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g01788 Cmo19g00819 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02079 Cmo-Chr1:14469978 Cmo11g01788 Cmo-Chr11:12574035 0 dispersed
Cmo11g01788 Cmo-Chr11:12574035 Cmo16g00945 Cmo-Chr16:6114152 7.67E-06 dispersed
Cmo11g01788 Cmo-Chr11:12574035 Cmo19g00819 Cmo-Chr19:8073698 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01788 Cmo_Chr11 FPKM 3.085749 1.991596 0.0 0.210725 0.32112 0.819759 0.208317 14.071454 14.233372 14.394295