Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01791 ATGAACATGGTTTGGCTCCTTTTATCACTCCTTTATATCTCAGAAGGGAGCTCAGGACATGAGGTAGTGAAAGTTGGAGCTATATTTTCACTTGCTTCTGTCAATGGGAAAGTGTCCAAGATAGCCATAGAGGCTGCTGAGAGAGATGTGAATGCTGATCCAAGTGTTCTTGGTGGAAGGAAGCTATCCATATCTATTCATGATGCTAATTACAGTGGTTTTCTTGGTATCACAGGAGCAATGAAGTACATGACGTCTGGCACAGTTGCCATCATCGGTCCTCAAGATGCTACAATGGCACAGATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTATCATACACAGCCTTGGACCCAGCACTTGCTACTCTGCAGTATCCATACTTCATTCAAACAGCTCCAAATGATCAGTTCCAAATGGCTGCAATTACAGACATTATCGGTTATTATGATTGGCACGACATAGTCGTAGTTTACACCGACGATGATCACTGTCGAAACGGTATGGTTGCATTAGGAGATAAACTTGAAGAGAGAAGCTTAAAAATTTCCTCTAAAGTGGCACTTCCCCCTTACCCAACAGCAACTAGAACAGAAGTTCGAGATGCACTTCTAAAGATAAAAACGATGGAATCTAGAGTGATCGTATTGTACACGTTCTCGAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTGGAATGATGGGGGCTGGATTTGTTTGGATAGCTTCTAGTTGGTTGTCAACAGTAATAGATTCTTATTCACCACTTCCCTTGAAAACTACCAACTCCATCCAAGGAGTTCTTACGCTTCGGCTGCACACACCGAGTTCTAAAAGGAAGCGATCTTTTATATCTCGTTGGAACGAGCTGAGTAATGGCTCGGTTGGGTTGAATGCATACAGCCTATATGCATATGATACTGTTTGGATGATTGCAAAAGGATTAAAAGAGTTATTTGATCAAAATGGCACCATTTCCTTCTCCAAAGATGAACGTGTTGGTAGTCTTAGTGGAGAGAGCTTGGATTTTAGCTCACTAGGAATCTTTAATGAAGGAAAGGAACTGCTTAACAATGTATTGAACATCAACATGACTGGTCTGACAGGGCCTATTCAGTTTCTAGATAGATATCCTTTACATCCTTCATATGATATCTTAAATGTTGTGAAATCTGGTATGAAGAGAATTGGGTATTGGTCCAACTATTCCGGGTTATCTATCGTGACACCAGAAACGTTGTATGAACGATCAGCCAATCGTTCTACATCGTCCCAACAGTTAAGCAGCATAGTGTGGCCTGGGGGATCAAGAATAAAGCCTCGTGGTTGGGTTCTACCACTCGATGGAAGGCGGTTAAGAATTGGCGTTCCACATAGAGTTAGTTATCAGGAATTTGTGACACCGGGTAATGGTAATGGCACAATCAGAGGATACTGCATAGATGTGTTCACTGCTGCCATAAACTTGCTTCCATATGCAGTGAATTATGAGTTTGTTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACTTTGAGCTTGTAAATAATGTTGCATTGAAAGAATTTGATGCTGCTGTCGGTGACATTGCCATTGTGACTAGTCGGACAAAGGTTGTCGACTTTACACAGCCTTATATCGACTCGGGGTTGGTCGTTATGATCCTTGTCAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGATTGCCACAGCAGCCTTTTTCCTCCTCATTGGATTAGTCGTGTGGATTTTGGAACATCGAAAAAACGATGAATTCCGCGGAAATCCCAGGACGCAACTTGTCACGATCCTCTGGTTTGGCTTCTCTACAATGTTTTTTTCACATAGAGAAAACGTCGTGAGCACGCTCGGACGTTGTGTGCTTGTCGTCTGGCTTTTCGTGGTTCTAATTATCAACTCGAGCTACACTGCTAGTCTAACATCCATATTCACAGTACAACAACTAGCCTCACCTATCACAGGAATTGATTCATTGATATCTAGCCATGTACCTATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTACTTAACTGAGCAACTTAACGTCCAAAAGTCTAGGCTAATTGCTCTTGGATCCCCAAAGGAGTATGCTGCTGCCCTAAAAAACGGAACGGTCGGAGCTATTGTCGACGAACAACCATACATCGACCTCTTTCTCACAGAGTACTGCGATTTTTCAATTAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGTAATCGACTTATCGACCGCCATACTAACTCTATCAGAGAGCGGCCGCCTTCAAAAGCTTCACGATAAGTGGTTCTCAAGAAAGTCTTGCAGTTCTGGAGAATCCGATTTAGAACAGCTTCAGTTACAGAGTTTCATCGGTCTGTTCTCCATTTGTGCCGGCGTATGTTTACTCGCTCTTCTGCTTCACTTTTTCTTGACGATGTGCCAATTCAACCGCCAGTTGAAACGAGATCCAGAAGCTTCGCCGTCGACCAGCGGCAGTTCTACTTCTACCCCTACGCGTCTGCGGAAATTCTTGGCGTTTGCAGACAAAAAGAAGAATCGAACGACGAGATATTCTAAAAGAAAGATCGAAGATAATAATACATTTCCGAATCAACGTCGAGAGGATTTTGTACATTGA 2688 42.63 MNMVWLLLSLLYISEGSSGHEVVKVGAIFSLASVNGKVSKIAIEAAERDVNADPSVLGGRKLSISIHDANYSGFLGITGAMKYMTSGTVAIIGPQDATMAQILSHLSNELHVPLLSYTALDPALATLQYPYFIQTAPNDQFQMAAITDIIGYYDWHDIVVVYTDDDHCRNGMVALGDKLEERSLKISSKVALPPYPTATRTEVRDALLKIKTMESRVIVLYTFSKTGFLVFEVAQSLGMMGAGFVWIASSWLSTVIDSYSPLPLKTTNSIQGVLTLRLHTPSSKRKRSFISRWNELSNGSVGLNAYSLYAYDTVWMIAKGLKELFDQNGTISFSKDERVGSLSGESLDFSSLGIFNEGKELLNNVLNINMTGLTGPIQFLDRYPLHPSYDILNVVKSGMKRIGYWSNYSGLSIVTPETLYERSANRSTSSQQLSSIVWPGGSRIKPRGWVLPLDGRRLRIGVPHRVSYQEFVTPGNGNGTIRGYCIDVFTAAINLLPYAVNYEFVLFGDGEKNPSYFELVNNVALKEFDAAVGDIAIVTSRTKVVDFTQPYIDSGLVVMILVKKLNSSPLAFLRPFTPMMWIATAAFFLLIGLVVWILEHRKNDEFRGNPRTQLVTILWFGFSTMFFSHRENVVSTLGRCVLVVWLFVVLIINSSYTASLTSIFTVQQLASPITGIDSLISSHVPIGFQVGSFAESYLTEQLNVQKSRLIALGSPKEYAAALKNGTVGAIVDEQPYIDLFLTEYCDFSIRGQQFTKSGWGFVIDLSTAILTLSESGRLQKLHDKWFSRKSCSSGESDLEQLQLQSFIGLFSICAGVCLLALLLHFFLTMCQFNRQLKRDPEASPSTSGSSTSTPTRLRKFLAFADKKKNRTTRYSKRKIEDNNTFPNQRREDFVH 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12588834 12593199 + CmoCh11G017910.1 Cmo11g01791 392410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01791 895 Pfam Ligand-gated ion channel 788 816 IPR001320 GO:0015276|GO:0016020
Cmo11g01791 895 Gene3D - 41 386 - -
Cmo11g01791 895 CDD PBP1_GABAb_receptor_plant 24 414 IPR044440 -
Cmo11g01791 895 PANTHER GLUTAMATE RECEPTOR 3.6 17 877 - -
Cmo11g01791 895 MobiDBLite consensus disorder prediction 860 881 - -
Cmo11g01791 895 SMART GluR_14 459 788 IPR001320 GO:0015276|GO:0016020
Cmo11g01791 895 Gene3D - 569 708 - -
Cmo11g01791 895 CDD GluR_Plant 456 786 - -
Cmo11g01791 895 MobiDBLite consensus disorder prediction 838 881 - -
Cmo11g01791 895 Gene3D - 719 793 - -
Cmo11g01791 895 Gene3D - 452 568 - -
Cmo11g01791 895 Gene3D - 138 411 - -
Cmo11g01791 895 PIRSF IGluLR_plant 1 894 IPR017103 -
Cmo11g01791 895 Pfam Receptor family ligand binding region 41 396 IPR001828 -
Cmo11g01791 895 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 877 - -
Cmo11g01791 895 MobiDBLite consensus disorder prediction 838 857 - -
Cmo11g01791 895 SUPERFAMILY Periplasmic binding protein-like I 17 449 IPR028082 -
Cmo11g01791 895 Pfam Bacterial extracellular solute-binding proteins, family 3 471 787 IPR001638 -
Cmo11g01791 895 SUPERFAMILY Periplasmic binding protein-like II 434 788 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01791 Cmo19g00823 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01791 Cmo-Chr11:12588834 Cmo20g00619 Cmo-Chr20:3031474 0 dispersed
Cmo20g00620 Cmo-Chr20:3045107 Cmo11g01791 Cmo-Chr11:12588834 0 dispersed
Cmo11g01791 Cmo-Chr11:12588834 Cmo19g00823 Cmo-Chr19:8110181 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01791 K05387 - csv:101208602 1409.82