Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01802 ATGGCTGCATTTATAGCTATGATAGTCTACATGGTTCTTTTGCCAACACCCTTTGCAGCTAAGGATGAAGAGTGGAAATCTGCTACTGCAACATACACCAAAGAAATAGATGGCGCTGGATTGAGTAGCATGTTGTTTAATGGAGGGAGTACCTGTGGAGCATGCTTTGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGGAAGGAAGTCCGACCGTCATCCTAACCGCCACCGACTTCTGTCCTCCCAATGATGGCCTATCTTCTGATTATGGTGGATGGTGCAATTTTCCCAAAGAACACTTCGAGATGTCAGAGGCAGCATTTACTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGATTAAGATTCACAGTTAGCGGGAATTCTCGATTCTTTCAAGTTTTGATTACTAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAAGTGAAGGGATCTAGAACAGGATGGATACCTCTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGGCAACCTCTCTCTTTTGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGCTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAAGGGAAACAATTTTGA 684 44.44 MAAFIAMIVYMVLLPTPFAAKDEEWKSATATYTKEIDGAGLSSMLFNGGSTCGACFELRCVDHILWCLEGSPTVILTATDFCPPNDGLSSDYGGWCNFPKEHFEMSEAAFTEIAEKKADIVPVQYRRVRCDRSGGLRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGAAPGNWQFGQTFEGKQF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12638289 12640424 + CmoCh11G018020.1 Cmo11g01802 392421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01802 227 Pfam Lytic transglycolase 40 125 IPR009009 -
Cmo11g01802 227 PRINTS Expansin/Lol pI family signature 172 186 IPR007118 GO:0005576
Cmo11g01802 227 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Cmo11g01802 227 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Cmo11g01802 227 PANTHER EXPANSIN-A20 38 227 - -
Cmo11g01802 227 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 224 IPR007117 -
Cmo11g01802 227 SMART dpbb_1 38 125 IPR007112 -
Cmo11g01802 227 PRINTS Expansin signature 74 84 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 134 146 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 33 47 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 60 71 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 210 226 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 110 123 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 146 167 IPR002963 GO:0009664
Cmo11g01802 227 PRINTS Expansin signature 93 110 IPR002963 GO:0009664
Cmo11g01802 227 SUPERFAMILY Barwin-like endoglucanases 14 153 IPR036908 -
Cmo11g01802 227 Gene3D - 135 227 IPR036749 -
Cmo11g01802 227 Pfam Expansin C-terminal domain 137 213 IPR007117 -
Cmo11g01802 227 Gene3D - 14 131 IPR036908 -
Cmo11g01802 227 SUPERFAMILY PHL pollen allergen 132 224 IPR036749 -
Cmo11g01802 227 PANTHER EXPANSIN-A15 38 227 IPR002963 GO:0009664
Cmo11g01802 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 135 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01802 Cmo19g00834 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01802 Cmo-Chr11:12638289 Cmo13g00120 Cmo-Chr13:694183 3.76E-80 dispersed
Cmo11g01802 Cmo-Chr11:12638289 Cmo19g00834 Cmo-Chr19:8165813 3.86E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01802 - - csv:101213241 418.313