Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01803 ATGTCGGTTTCGCAAGCCCTAGGTGGCAAGTCCAGATGCGGCCGTGCGATCGGCCCTTCCCTCGATAAGATTGTCAAGAACGCGGCCTGGCGTAAGCATTCTCACCTTGTTTCCTCTTGCAAATCCGTTCTCGATAAGCTTGATTCTATTTCGGAAGCTTCTCTTGATCCTGCTTCTCCGATTGCTGGCCTTTCACCGGCTGATGCGGAGTTTGTGCTCCAACCGCTCCTTTTGGCCCTCGATGCCGCCTACGTCAAGGTTGCTGAGCCCGCGCTTGAGTGCGTCTTCAAATTGTTCTCCCGCGGTCTATTCCGTGGCGAGATCGAGAGGCCGGATGGCGAGGCGAATTCTGGTGCTAGTTCCATTGTGTATAGGATCGTTGAGTCTGTGTGCAAGTCGGGAGGTCTTGGTGATGAAGGAATTGAGCTCATTGTTCTCAGGGTGTTGCTCTCTGCGGTTCGATGCCCTTGTGTATTGATCCGCGGGGATTGCTTGGTTAATGTTGTTCGGACTTGTTACAATGTGTATCTCGGTGGCTTGAGTGGTACGAATCAGATCTGTGCAAAATCCGTTCTAGGTCAAATAATGATCATTATTTTCAGTAGGATGGAGGAAGACTCCATGGATGTTCCTGCTAGTATAATTTCTGTGAATGAATTATTGGAATTTACCGACAAGAACTTGAATGAAGGCAATTCTATATATTTTTGCCAGAACTTTATTAATGAGGTAATGGATGCCAGCGAAGGGGTTGCGGATAAGAAACTATTTTCGTCTTGGGGACAATTGCAGAATGGCAATGCTTCGCCACTTAAAGCTGACAATAAAGGTGAATCTGATGTGGGAGAAACGGAAGATGTAGCCGAATCAAGTGGTTGTAGTAAGATTAGGGAGGATGGATTCCATTTGTTTAAGAATTTGTGTAAGTTGTCGATGAAATTCTCATCCCCGGAGCACCCAGATGATCAGATCCTCTTAAGGGGCAAAACACTGTCTCTGGAACTGCTAAAGGTGATTATGGATAAGGCAGGGCCAGTTTGGCGCCTTAACGAGAGGTTTCTCAATTCTATCAAGCAGTTTCTTTGCTTATCATTATTAAAAAACAGTGCCCTGTCGGCAATGGCCATCTTCCAGATTCAATGTTCTATTTTTATGAGCTTGTTGACAAAATTTAGATCAGGACTGAAAGCAGAAATTGGTATCTTTTTTCCCATGCTTGTCCTCCGAGTGCTTGAGAATGTACTTCAGCCTAGTTTCTTGCAGAAAATGACCGTGCTCAATTTATTGGATAAGATATCTCAGGATTCACAGATTATGGTGGACATTTTTGTCAACTATGATTGTGATGTTGATTCTCCAAATATTTTCGAGAGGATTGTGAATGGCCTTTTGAAAACTGCTCTTGGACCGCCTTCTGGTTCAACCTCAACATTGTCTCCAGCGCAAGATATTACATTTAGGCATGAATCTGTTAAGTGTTTGGTAAGCATCATTAAATCAATGGGAACTTGGATGGACCAACAACTGAAGCTAGACGATACATATTTTCTCAAGACTTCTGAGAGTGATGTTTCACTTGAGAATTGTTTAAGTGGGGAAGAAACAGCTGCTGTTGACTCTGAGCTCCATCCTGATGGAAATCCTGAGTTCTCAGATGCTGCTACACTTGAGCAACGCAGAGCTTACAAAATTGAGCTCCAGAAAGGTATTTCGCTGTTCAACAGGAAACCTTCCAGGGGTATTGAGTTTCTGATTAGCACGAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCGTCTTTTCTCAAGAATACTAACGGCCTGAATGAAAGAGTCATTGGAGATTATTTGGGTGAAAGGGAGGAATTTCCTTTGAAAGTTATGCATGCTTATGTTGATTCATTTAATTTTAAAGCTATGGACTTTGGTGAAGCAATAAGGTTTTTCCTGCGAGGCTTCAGGTTACCAGGAGAGGCCCAAAAAATTGACCGTATCATGGAGAAGTTTGCTGAGCGGTACTGTAAATGTAGCCCTGGTTCATTCACAAGTGCAGATACTGCTTATGTTCTTGCTTATTCTGTTATTATGCTGAACACAGATGCTCATAATAACATGGTGAAAGATAAGATGACGAAAACCGATTTTATCCGGAATAATCGAGGAATTGATGACGGCAAAGATTTACCTGATGAGTATCTGGGTGCTCTTTACGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCAGCTTCACAAAGTAAGCAGGCAACTAGCATCAACAAACTTTTGGGCTTAGATGGTATACTCAATCTAGTTTCTTGGAAGCAGACAGAAGAAAAAGCTGTGGGTGCAAACGGGCTTCTTATAAGACACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCTGAGTCTGTTTATCACGCTGTGACTGATGTAACAATATTGAGGTTTATGGTGGAAGCCTGCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTTGACCAAAGTGATGATAAGCTTGCTACTTCTCAATGCTTACTAGGCTTTCGGTTTGCTGTACACGTTACAGCCGTTCTGGGTTTGCAGACTCAAAGGGACGCTTTCGTGACATCAATGGCTAAGTTTACCAATCTTCATTGTGCTGCCGATATGAAACAAAAAAATGTTGAAGCTGTGAAGGCTATAATTTCAATTGCCATAGAGGATGGTAATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAGAATTTACAATTATTGGGAGAGGGTGCACCACCCGATGCGTCATTTTTGACATCATCCAATATTGAAACTGAAGAGAAAGTGCAGAAGTCGGCAGGTCTGTCATCTCTGAAGAAAAAGGGAGGTCTTCAAAATCCAGCTGTTATGGCTGTTGTTCGTGGCGGTTCATATGACAGCACCTCTCATGGAGCGAATACTCCAGGACTAGTAACTCCTGAACAGATTAACCATCTTATTTCGAACTTGAATTTGCTGGATCAAATAGGCAATTTTGAGTTGAACCACGTATTTGCTCATAGTCAAAGTTTGAACAGTGAAGCAATAGTAGCATTTGTGAAGGCCCTATGCAAAGTTGCTATTGCAGAATTGCAGTCTCCAACAGACCCACGTGTGTTCAGCCTCACTAAATTAGTTGAAGTGGCGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGCATGTGGAGTGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAGAATCTATCGGTTGCAATATTTGTGATGGATTCACTGAGGCAGCTTGCGATGAAGTTTTTGGAGCGTGAGGAGCTTGCAAATTATAACTTCCAGAATGAATTTCTGAGACCCTTCGTAATTGTTATGCAGAAAAGCAACTCCACGGAAATCAGGGAATTAATAGTTCGGTGCATTTCGCAAATGGTTCTCAGTCGTGTCAACAATGTCAAATCTGGATGGAAAAGTGTTTTTATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAATATTGTCTTATTGGCTTTTGAAACGATGGAAAAAATAGTTCGAGAATATTTTCCTTATATAACAGAGACTGAAACTACAACATTTACCGATTGCGTTCGGTGTCTCATCACTTTCACAAATAGTAGATTTAACAGTGATGTCAGTCTCAATGCCATTGCGTTCCTTCGGTTTTGTGCTGTAAAGCTTGCAGAAGGGGGACTTGTTTGCTACGAGATGACTGGAGATAATGTTTCATCCAATACTCCTGATGCACCCCTATCCACACCCGTACCCACAGATAAGGACGATTATGCTTCCTATTGGGTTCCTTTACTTGCAGGGCTATCAAAGTTAACTTCTGATCCTAGATCACCGATCAGAAAAAGTTCCTTGGAAGTTCTTTTTAATATCCTAAAAGATCATGGCCATCTTTTCTCGCGTCAGTTTTGGGTTGGTGTTATCAATACCATAGTTTTCCCCATATTTAGTTCTTTGCATGACAAGAAAGAAATGGACGAGGATGAAAATGATGAATATTCAGAAGGAACTACATGGGATTCTGATACCTGTACAGTGGCAGCAGATTGTTTAGTAGATCTGTTCATTAGCTTTTTCAATGTTATAAGGTCTCAACTACCCGGGGTGGTGTCGATTCTGACAGGATACATTAGGAGTCCGATCCAGGGTCCTGCCAGCACGGGTGTTGCTGCATTAATGCGCTTGGCGGGCGACTTGGGTAACAGGCTTACCGAAGACGAATGGAGAGAGATTTTTCTTGCTTTGAAGCAAGCTGCCACATTAACAGTGCCTGGGTTTATGAAGGTCCTGAGAACCATGGATGATGTCAATGTTCTCGGGATCGCTCAATCTTATTATGATGTGGATGTGGCTTCTGATCAAGGTTTGTCGGCTGATGGTCTTGACGACGACGATCTGCAGATGGCGTCCTACATTGTTTCGAGGATGAAGAGTCATATCGCAATGCAACTCCTCATCATACAGGTCATTACTGATCTGTACAAGAGCCATACCCAACCATTCTCAGAAGCCAACATTTCGATCATTCTCGATATCTTCTCTTCCGTTGCCACACATTCCCAGAAACTGAATTCCAACACAGTCCTTCATAAGAAGCTACAGAAAGCTTGCTCCATCCTCGAGATTTCCGACCCACCCCTGGTTCACTTCGAAAACGAGTCATATCGGAGCTACCTCAACTTCCTCCAGAATATGCTCGCAGACAGTCCTTCACTGACTAACGCAACTCTCGTAGAATCCGAACTCGTCGTAGTTTGCGAACAAATTCTGCATATTTACTTGAAGTGTACCGGGGCGCCAAGTGAGAAGAAAGAACCCAACCAGCCTGTGCTACATTGGATTCTTCCATTGGGGTCAGCAAAGAAGGAAGAGGTAGCTGCTCGTACGTCTCTAGTCGTCTCGGCGTTGGAGGTTATCCGCGGGTTTGAAAGGGACCTATTTAAAAGGTGTGTTCAACGGCTTTTCCCATTGTTGGTAGATCTTGTTAGGAGTGAACATAGCTCTGGAGAAGTTCAGCTTGTTTTGAGCAGCATATTACAATCATGTATAGGCCCAATAATTATGCAATAA 5139 43.12 MSVSQALGGKSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSISEASLDPASPIAGLSPADAEFVLQPLLLALDAAYVKVAEPALECVFKLFSRGLFRGEIERPDGEANSGASSIVYRIVESVCKSGGLGDEGIELIVLRVLLSAVRCPCVLIRGDCLVNVVRTCYNVYLGGLSGTNQICAKSVLGQIMIIIFSRMEEDSMDVPASIISVNELLEFTDKNLNEGNSIYFCQNFINEVMDASEGVADKKLFSSWGQLQNGNASPLKADNKGESDVGETEDVAESSGCSKIREDGFHLFKNLCKLSMKFSSPEHPDDQILLRGKTLSLELLKVIMDKAGPVWRLNERFLNSIKQFLCLSLLKNSALSAMAIFQIQCSIFMSLLTKFRSGLKAEIGIFFPMLVLRVLENVLQPSFLQKMTVLNLLDKISQDSQIMVDIFVNYDCDVDSPNIFERIVNGLLKTALGPPSGSTSTLSPAQDITFRHESVKCLVSIIKSMGTWMDQQLKLDDTYFLKTSESDVSLENCLSGEETAAVDSELHPDGNPEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLISTKKVGGSPEEVASFLKNTNGLNERVIGDYLGEREEFPLKVMHAYVDSFNFKAMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCSPGSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMTKTDFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMNSDSSASQSKQATSINKLLGLDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEACWGPMLAAFSVTLDQSDDKLATSQCLLGFRFAVHVTAVLGLQTQRDAFVTSMAKFTNLHCAADMKQKNVEAVKAIISIAIEDGNFLQEAWEHIFTCLSRIENLQLLGEGAPPDASFLTSSNIETEEKVQKSAGLSSLKKKGGLQNPAVMAVVRGGSYDSTSHGANTPGLVTPEQINHLISNLNLLDQIGNFELNHVFAHSQSLNSEAIVAFVKALCKVAIAELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMTGDNVSSNTPDAPLSTPVPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVINTIVFPIFSSLHDKKEMDEDENDEYSEGTTWDSDTCTVAADCLVDLFISFFNVIRSQLPGVVSILTGYIRSPIQGPASTGVAALMRLAGDLGNRLTEDEWREIFLALKQAATLTVPGFMKVLRTMDDVNVLGIAQSYYDVDVASDQGLSADGLDDDDLQMASYIVSRMKSHIAMQLLIIQVITDLYKSHTQPFSEANISIILDIFSSVATHSQKLNSNTVLHKKLQKACSILEISDPPLVHFENESYRSYLNFLQNMLADSPSLTNATLVESELVVVCEQILHIYLKCTGAPSEKKEPNQPVLHWILPLGSAKKEEVAARTSLVVSALEVIRGFERDLFKRCVQRLFPLLVDLVRSEHSSGEVQLVLSSILQSCIGPIIMQ 1712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12643485 12653259 + CmoCh11G018030.1 Cmo11g01803 392422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01803 1712 Pfam BIG2 C-terminal domain 1505 1703 IPR046455 -
Cmo11g01803 1712 Pfam Sec7 domain 563 744 IPR000904 GO:0005085|GO:0032012
Cmo11g01803 1712 Gene3D - 1102 1347 IPR011989 -
Cmo11g01803 1712 Gene3D - 548 636 - -
Cmo11g01803 1712 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 1706 - -
Cmo11g01803 1712 Pfam Domain of unknown function (DUF1981) 1112 1194 IPR015403 -
Cmo11g01803 1712 Pfam Dimerisation and cyclophilin-binding domain of Mon2 15 206 IPR032629 -
Cmo11g01803 1712 Gene3D - 637 757 IPR023394 -
Cmo11g01803 1712 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 298 455 IPR032691 -
Cmo11g01803 1712 CDD Sec7 562 744 IPR000904 GO:0005085|GO:0032012
Cmo11g01803 1712 SUPERFAMILY Sec7 domain 559 750 IPR035999 GO:0005085|GO:0032012
Cmo11g01803 1712 SMART sec7_5 559 744 IPR000904 GO:0005085|GO:0032012
Cmo11g01803 1712 SUPERFAMILY ARM repeat 1082 1704 IPR016024 -
Cmo11g01803 1712 Pfam C-terminal region of Mon2 protein 1278 1348 IPR032817 -
Cmo11g01803 1712 ProSiteProfiles SEC7 domain profile. 555 742 IPR000904 GO:0005085|GO:0032012
Cmo11g01803 1712 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 9 1706 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01803 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 2997.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01156 Cmo-Chr6:8861116 Cmo11g01803 Cmo-Chr11:12643485 0 dispersed
Cmo11g01803 Cmo-Chr11:12643485 Cmo14g02045 Cmo-Chr14:14938692 0 dispersed
Cmo11g01803 Cmo-Chr11:12643485 Cmo19g00836 Cmo-Chr19:8177898 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g01803 Cmo_Chr11 FPKM 12.084566 12.393135 17.024101 16.694481 11.950683 13.719216 13.470435 25.565416 23.662806 26.081959