Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01818 ATGGGTTACTTATGTGATTTCTGTGGGCATCAAAGGTCGATTGTTTACTGTCGATCCGACTCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCACTGTCGAGGCGCCACTTGAGGACGTTGTTATGTGATAGGTGCCATTCACAAGCTGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCCCGAAAGAGGCAACCAATCAATTGTTTCTCAGGATGCCCGACAGCTGCAGAACTCTCATCTATCTGGTCGTTTGTTCTAGATCTCCCTTCTGTTGGCGATGCTTGTGAACAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCCTGGGGCCCTGACGATCAAGCTGGTCAAAATGTATCTGGTGCAGATCAAACCAATGAATTCTCAAATGAGGATAGATCAATTTGGTATGGCTCCTCTTCAATGCCTCAATATCCATCCAAGCTTCACATCGCGGACCAACCAATGACGATAGATGCTACTTCACCCAAGTTGCACTGTGCTGGAACAAAAGGTCCTGGACTCGATATTGAAGATGACCTCTACGAGAATTTGAATATGGATGAAGATAGTTTGAATCTTGAAAACTATGATGAACTATTTGGTGTATCTCTCAGTTTTTCTGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATGAAAAGTCTGTCCGCCACGAAATCTGGTTGCCCTGGTGTGCCTGCAGCAGAGGGAGCGTCCGTTGGTTTAGTTAATAATACGATGCGTCCAGCGAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCGAAGACTGAACCGATTCTCTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACGGGAGAGAGTAGCGCAGGCGAACCTCAAGACTGTGGAGCTTCACCAATGCTTCTAATGGGAGAGCCTCCTTGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCTTCTCGCAAAGAGAGGGCCGATATTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCGTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1242 44.85 MGYLCDFCGHQRSIVYCRSDSAALCLSCDRNVHSANALSRRHLRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCFSGCPTAAELSSIWSFVLDLPSVGDACEQELGLMSIAENSAVNAWGPDDQAGQNVSGADQTNEFSNEDRSIWYGSSSMPQYPSKLHIADQPMTIDATSPKLHCAGTKGPGLDIEDDLYENLNMDEDSLNLENYDELFGVSLSFSEELLENGGIDSLFRMKSLSATKSGCPGVPAAEGASVGLVNNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTGESSAGEPQDCGASPMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKERADIRRRVKGRFVKAGEAYDYDPLNQTRSY 413
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 12734629 12737932 - CmoCh11G018180.1 Cmo11g01818 392437
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01818 413 CDD Bbox1_BBX-like 4 47 - -
Cmo11g01818 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo11g01818 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Cmo11g01818 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 413 - -
Cmo11g01818 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo11g01818 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cmo11g01818 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
Cmo11g01818 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 413 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00244 Cmo-Chr2:1142560 Cmo11g01818 Cmo-Chr11:12734629 1.97E-164 dispersed
Cmo06g01671 Cmo-Chr6:11562534 Cmo11g01818 Cmo-Chr11:12734629 4.11E-31 dispersed
Cmo11g01818 Cmo-Chr11:12734629 Cmo20g00608 Cmo-Chr20:2982028 3.37E-68 dispersed
Cmo11g01818 Cmo-Chr11:12734629 Cmo19g00853 Cmo-Chr19:8279509 0 wgd
Cmo11g01818 Cmo-Chr11:12734629 Cmo20g00696 Cmo-Chr20:3448685 3.34E-180 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10653 PF06203 CCT 9.50E-16 CL0281 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01818 - - csv:101216326 720.694