Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g01818 | ATGGGTTACTTATGTGATTTCTGTGGGCATCAAAGGTCGATTGTTTACTGTCGATCCGACTCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCACTGTCGAGGCGCCACTTGAGGACGTTGTTATGTGATAGGTGCCATTCACAAGCTGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCCCGAAAGAGGCAACCAATCAATTGTTTCTCAGGATGCCCGACAGCTGCAGAACTCTCATCTATCTGGTCGTTTGTTCTAGATCTCCCTTCTGTTGGCGATGCTTGTGAACAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCCTGGGGCCCTGACGATCAAGCTGGTCAAAATGTATCTGGTGCAGATCAAACCAATGAATTCTCAAATGAGGATAGATCAATTTGGTATGGCTCCTCTTCAATGCCTCAATATCCATCCAAGCTTCACATCGCGGACCAACCAATGACGATAGATGCTACTTCACCCAAGTTGCACTGTGCTGGAACAAAAGGTCCTGGACTCGATATTGAAGATGACCTCTACGAGAATTTGAATATGGATGAAGATAGTTTGAATCTTGAAAACTATGATGAACTATTTGGTGTATCTCTCAGTTTTTCTGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATGAAAAGTCTGTCCGCCACGAAATCTGGTTGCCCTGGTGTGCCTGCAGCAGAGGGAGCGTCCGTTGGTTTAGTTAATAATACGATGCGTCCAGCGAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCGAAGACTGAACCGATTCTCTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACGGGAGAGAGTAGCGCAGGCGAACCTCAAGACTGTGGAGCTTCACCAATGCTTCTAATGGGAGAGCCTCCTTGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCCGTAATGCGTTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTACGCTTCTCGCAAAGAGAGGGCCGATATTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCGTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA | 1242 | 44.85 | MGYLCDFCGHQRSIVYCRSDSAALCLSCDRNVHSANALSRRHLRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCFSGCPTAAELSSIWSFVLDLPSVGDACEQELGLMSIAENSAVNAWGPDDQAGQNVSGADQTNEFSNEDRSIWYGSSSMPQYPSKLHIADQPMTIDATSPKLHCAGTKGPGLDIEDDLYENLNMDEDSLNLENYDELFGVSLSFSEELLENGGIDSLFRMKSLSATKSGCPGVPAAEGASVGLVNNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTGESSAGEPQDCGASPMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKERADIRRRVKGRFVKAGEAYDYDPLNQTRSY | 413 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 12734629 | 12737932 | - | CmoCh11G018180.1 | Cmo11g01818 | 392437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g01818 | 413 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
| Cmo11g01818 | 413 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cmo11g01818 | 413 | ProSiteProfiles | CCT domain profile. | 356 | 398 | IPR010402 | GO:0005515 | |
| Cmo11g01818 | 413 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 1 | 413 | - | - | |
| Cmo11g01818 | 413 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Cmo11g01818 | 413 | ProSiteProfiles | Zinc finger B-box type profile. | 43 | 90 | IPR000315 | GO:0008270 | |
| Cmo11g01818 | 413 | Pfam | CCT motif | 356 | 398 | IPR010402 | GO:0005515 | |
| Cmo11g01818 | 413 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE | 1 | 413 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g00244 | Cmo-Chr2:1142560 | Cmo11g01818 | Cmo-Chr11:12734629 | 1.97E-164 | dispersed | |
| Cmo06g01671 | Cmo-Chr6:11562534 | Cmo11g01818 | Cmo-Chr11:12734629 | 4.11E-31 | dispersed | |
| Cmo11g01818 | Cmo-Chr11:12734629 | Cmo20g00608 | Cmo-Chr20:2982028 | 3.37E-68 | dispersed | |
| Cmo11g01818 | Cmo-Chr11:12734629 | Cmo19g00853 | Cmo-Chr19:8279509 | 0 | wgd | |
| Cmo11g01818 | Cmo-Chr11:12734629 | Cmo20g00696 | Cmo-Chr20:3448685 | 3.34E-180 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10653 | PF06203 | CCT | 9.50E-16 | CL0281 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g01818 | - | - | csv:101216326 | 720.694 |