Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01832 ATGCTTTTCCCCTTGCAGCTGCTACTAAGTGACCAGTTCTTCCATTCATTGTACGGCCTAGAAAGTCAACTCATTGACCTGTCTGCAATTTGTTGGATTGAAGAGCTTAATTTGCCTGATCTTTCGCTTCTTTCATGTGTTCTTCTTCGATTTGATTTTGAATGTTTCGTTTTTCTTTTCCGTGAAATCAACGTTGTGATTTGTAAAGGTTTGGAAAACGGCGTCTCGGTATCATTTGATTCACACGGCGGCTCTCCTTGCTGCCCCCTTCCACCAAGAACCCTAACATTCCTTCACCCAAAAATGGCCACCTCTGCTATCCAGCAATCCGCCTTTGCCGGCCAGACTGCCTTGAAGCAATCCAATGAGCTCGTCCGAAAGGTCGGCGCTTTCGGTGGCAGCCGCTTCACCATGCGGCGGACGGTCAAGAGTGCTCCTCAAAGCATATGGTATGGTCCAGATCGCCCAAAATACTTGGGACCCTTCTCTGAACAAACACCATCCTACCTGACTGGAGAGTTCCCAGGTGACTACGGCTGGGACACAGCCGGTCTGTCAGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAGGTGATCCACTCCAGATGGGCCATGCTCGGTGCACTAGGCTGTGTCTTCCCAGAAGTCCTTGCAAAGAATGGTGTCAAGTTCGGTGAATCAGTATGGTTCAAGGCCGGTTCACAGATCTTCTCCGAAGGTGGCCTCGATTACCTTGGCAACCCAAACCTCGTCCACGCACAGAGCATCCTGGCCATCTGGGCTTGCCAGGTTGTGCTGATGGGGTTCGTGGAAGGCTACCGGGTTGGGGGCGGTCCTCTTGGTGAAGGGCTGGACCCAATCTACCCAGGAGGGGCGTTCGACCCACTGGGATTGGCGGATGACCCAGATGCCTTTGCTGAGTTGAAAGTGAAGGAGCTGAAGAATGGAAGGCTGGCAATGTTCTCCATGTTTGGATTCTTCGTGCAGGCTATTGTCACTGGAAAGGGTCCTATTGAGAATCTGTTCGACCATAAGCTTCACGACTGCCCACAATCCGAAATGTTAAAACCCCACAAAACCCCACCTCGTATTTGCCTCCATAGCCTTATTTCTCTTCTGGGTTCTCACCAATCTCTCAGTTTCTCGTCGGAGCCGCACCCTTGTTCAGTCCCTTCACTTTCGCCCGCCGCAGACCCTTTGCCGGAATTGGTATCTAAAATCTCTGACATTCTTTCGCGCCCCAAATGGGAATGGAGTTCAGAGCTTTGCCATTTGAGCCGCAAACTCGAACCCCATCATGTAGTGAAGATCCTCGAAACGCACGAGAACACGGATTTAATCTTGCGCTTCTTTTACTGGGTTTCGAAGAGGCATTTTTTCCAACACGACATGAGCTGCTTCGTTTCGATGCTGAATAGGTTAGTCCAGGATCGTCTCTTTGCGCCTGCTGATCATTTGGGCAAGTTTGAAATGGTTGGTTTAGCTCGAGATGTGTATATTGAGATGCTTAACAGTGGGATCAGACCCAGTTTATTGACATTTAATACAATGATAAATATCTTGTGCAAGAAGGGAATGGTTCAAGAAGCAGAGGTGATTATGAGTCATATTTTTCATTATGATGCCGGTCCAGATGCTTTTACCTACACATCTTTGATTCTTGGGCATTGTAGAAATCAAAACTTAGATTTGGCCTTCGAAATGTTTGACCGAATGGTGAAAGACGGGCACGATCCAAATTCTGTGACTTATTCAACCCTTATCAATGGACTATGTAATGAAGAGAGGCTAGAAGAGGCAATGGATTTGCTTGAGGAAATGGTTGAGAAAGGGATCGAACCAACCGTATATACGTACACCGTTCCAATAGTTTCGTTATGTGATGCTGGTCGTCTTAGTGAGGCAGTAGGGCTTCTAGGAAAAATGAAAAAGAGGGGATGTAGCCCGAATGTTCAAACATTTACAGCTCTAATTAGTGGTTTATCACGAGACGGGAAATTTCAGGTTGCGATTGGCCTATATCACAAGATGTTGGCTGACGGTTTGGTTCCAACAACTGTTACGTACAATGCCCTGATTAATCAGTTGTGTGTGGAAGGAAGATTCGAAACCGCCCTCAAGATTTTTCAGTGGATGGAGAGTCATGGCAGTTTGCCGAATACACGAACGTATAACGAAATAATTAAAGGCTTTTGTTCCACGGGTGACATTCAGAAGGCAATGGTTCTCTTTGACAAAATGCTCAAGGCTGGTCCTTCCCCTAATGTGATAACTTACAATACACTTATTTATGGATATACCAAGCAGGGTTATATGAACAATGCAATGAGATTGTTAGAAATGATGAAGGGGAATGGATTTAAGCCCGATTCTTGGACTTATACTGAACTGATTTCGAGGTTTTCTAAAGCGGGAAAATTGGATCATGCTTCTTCTCTTTTCAATGAAATGGAGGAACATGGTATTTCCCCGAATCAAGTTACGTATACAGCTTTAATCGATGGATATTTCACTGTCGAAAAAGTGGATGATGCTGTGACATTGTTTGAGAAGATGGTGGAAAGTGGAAATCGTCCAAGTAGTGAAACCTACAATGTGATGATAAGCGGTTTCTCTAAAATTAATCGTTTTTCTGAAGCCGAGAATTTCTGTGGTAAAATGGTGAAGCAAGGCTTGCTCCCGAATGTCATTACCTACACCGCCTTGATTGATGGACTGTGCAGGAATGGCAGGACGAGTCTTGCATTCAAAATTTTCCATGAAATGGAGAAAAGAAGTTATTTACCAAATTTATATACCTATAGTTCCTTAATTTACGGCCTATGCCAAGAAGGTAGGGCCGAGGATGCAGAAAGGTTACTCGATGAAATGGAGAAGAAAGGATTAACCCCGGATGAGATAACTTTTACGTCTCTTATGGATGGTTTTGTTGCACTTGGCAGAATTGATCATGCATTTCTTCTTTGCAGGCGAATGATTGATGTTGGCTGCAGACCGAATTATCGAACCTTCGGCATATTGCTGAAGGGATTGCAAAAGGAAAGCCAGTCGCTTACGGAAAAAGTTGTAGCCGAACATGAAGTCACGTATACTTGTAGCTCTAACGATAAACATCACAGCACATGCACAATGTACGATCTCCTGGCTAGGTTGTCTTGCTATGGATGCGAGCCAACGGTTGATACGTATACCACTTTAGTGAAAGGCTTGTGTGGAGAGGGAAGATGCAACGAGGCAGATCAGCTTGTTGCAAGCATGAAGGAGAAAGATTTGCAACCTGGTGAAGAAATTTATCTCGCTCTATTGGTTGGTCGATGTAAGAACTTGGAAGTGGAATCTGCTCTTAAAGTCTTCGACTCTATGGTTACAATAGGTTTCGAGCTGCACCTATCAGCTTACAAGGCTCTCATATGTGCACTTAGCAAAGCGAATTGCAGACACGAAGCTCAATGTATGTTTCAAACTATGCTCGAGAAGCATTGGAATAGTGACGAGGTTGTCTGGACAGTGTTACTTGATGGGTTACTCAAGGAGGGGGAAACTGATCTAAGTTTGAAGCTTCTTCATGTCATGGAATCGAGAAATTGTACTCTCAATCTCCAGACGTACGTTATGTTGGCCAGAGAACTATCTACACTCGATTGCTCGATCGAGATCCCGCAAGTCTCTAAACATTTGGGAAGTGTAAAAGATAAACGTTAA 3708 45.12 MLFPLQLLLSDQFFHSLYGLESQLIDLSAICWIEELNLPDLSLLSCVLLRFDFECFVFLFREINVVICKGLENGVSVSFDSHGGSPCCPLPPRTLTFLHPKMATSAIQQSAFAGQTALKQSNELVRKVGAFGGSRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHKLHDCPQSEMLKPHKTPPRICLHSLISLLGSHQSLSFSSEPHPCSVPSLSPAADPLPELVSKISDILSRPKWEWSSELCHLSRKLEPHHVVKILETHENTDLILRFFYWVSKRHFFQHDMSCFVSMLNRLVQDRLFAPADHLGKFEMVGLARDVYIEMLNSGIRPSLLTFNTMINILCKKGMVQEAEVIMSHIFHYDAGPDAFTYTSLILGHCRNQNLDLAFEMFDRMVKDGHDPNSVTYSTLINGLCNEERLEEAMDLLEEMVEKGIEPTVYTYTVPIVSLCDAGRLSEAVGLLGKMKKRGCSPNVQTFTALISGLSRDGKFQVAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETALKIFQWMESHGSLPNTRTYNEIIKGFCSTGDIQKAMVLFDKMLKAGPSPNVITYNTLIYGYTKQGYMNNAMRLLEMMKGNGFKPDSWTYTELISRFSKAGKLDHASSLFNEMEEHGISPNQVTYTALIDGYFTVEKVDDAVTLFEKMVESGNRPSSETYNVMISGFSKINRFSEAENFCGKMVKQGLLPNVITYTALIDGLCRNGRTSLAFKIFHEMEKRSYLPNLYTYSSLIYGLCQEGRAEDAERLLDEMEKKGLTPDEITFTSLMDGFVALGRIDHAFLLCRRMIDVGCRPNYRTFGILLKGLQKESQSLTEKVVAEHEVTYTCSSNDKHHSTCTMYDLLARLSCYGCEPTVDTYTTLVKGLCGEGRCNEADQLVASMKEKDLQPGEEIYLALLVGRCKNLEVESALKVFDSMVTIGFELHLSAYKALICALSKANCRHEAQCMFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLSLKLLHVMESRNCTLNLQTYVMLARELSTLDCSIEIPQVSKHLGSVKDKR 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12801551 12809572 + CmoCh11G018320.1 Cmo11g01832 392451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01832 1235 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 861 1214 - -
Cmo11g01832 1235 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 649 970 - -
Cmo11g01832 1235 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 465 714 - -
Cmo11g01832 1235 Pfam PPR repeat 1168 1198 IPR002885 -
Cmo11g01832 1235 Pfam PPR repeat 1102 1128 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Cmo11g01832 1235 SUPERFAMILY Chlorophyll a-b binding protein 149 347 - -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 897 931 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1166 1200 IPR002885 -
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 1029 1149 IPR011990 GO:0005515
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 827 861 IPR002885 -
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 613 702 IPR011990 GO:0005515
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 418 540 IPR011990 GO:0005515
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 757 791 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 1064 1096 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 725 758 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 689 723 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 1168 1201 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 619 653 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 515 536 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 549 582 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 795 827 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 899 932 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 969 1002 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 584 618 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 934 968 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 655 687 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 829 862 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 759 793 IPR002885 -
Cmo11g01832 1235 TIGRFAM PPR: pentatricopeptide repeat domain 865 898 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 512 546 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 756 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 967 1001 IPR002885 -
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 703 819 IPR011990 GO:0005515
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 1150 1217 IPR011990 GO:0005515
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 820 887 IPR011990 GO:0005515
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 541 612 IPR011990 GO:0005515
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 888 960 IPR011990 GO:0005515
Cmo11g01832 1235 Gene3D Tetratricopeptide repeat domain 961 1028 IPR011990 GO:0005515
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 652 686 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Cmo11g01832 1235 Pfam Pentatricopeptide repeat domain 605 661 IPR002885 -
Cmo11g01832 1235 Pfam Pentatricopeptide repeat domain 954 1011 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1061 1095 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 792 826 IPR002885 -
Cmo11g01832 1235 Pfam PPR repeat family 756 800 IPR002885 -
Cmo11g01832 1235 Pfam PPR repeat family 896 945 IPR002885 -
Cmo11g01832 1235 Pfam PPR repeat family 546 595 IPR002885 -
Cmo11g01832 1235 Pfam PPR repeat family 686 735 IPR002885 -
Cmo11g01832 1235 Pfam PPR repeat family 826 875 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 862 896 IPR002885 -
Cmo11g01832 1235 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 932 966 IPR002885 -
Cmo11g01832 1235 SUPERFAMILY HCP-like 692 922 - -
Cmo11g01832 1235 Pfam Chlorophyll A-B binding protein 167 332 IPR022796 -
Cmo11g01832 1235 Gene3D Chlorophyll a/b binding protein domain 157 357 - -
Cmo11g01832 1235 Pfam PPR repeat 1057 1089 IPR002885 -
Cmo11g01832 1235 Pfam PPR repeat 508 535 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01004 Cmo-Chr5:8072756 Cmo11g01832 Cmo-Chr11:12801551 2.43E-22 dispersed
Cmo10g00352 Cmo-Chr10:1597439 Cmo11g01832 Cmo-Chr11:12801551 6.25E-26 dispersed
Cmo11g01832 Cmo-Chr11:12801551 Cmo12g00619 Cmo-Chr12:3876244 9.14E-21 dispersed
Cmo12g00621 Cmo-Chr12:3893979 Cmo11g01832 Cmo-Chr11:12801551 4.10E-08 dispersed
Cmo17g00570 Cmo-Chr17:5853506 Cmo11g01832 Cmo-Chr11:12801551 9.34E-49 dispersed
Cmo17g01198 Cmo-Chr17:9614352 Cmo11g01832 Cmo-Chr11:12801551 5.78E-34 dispersed
Cmo20g00461 Cmo-Chr20:2138279 Cmo11g01832 Cmo-Chr11:12801551 2.13E-70 dispersed
Cmo02g01618 Cmo-Chr2:9325397 Cmo11g01832 Cmo-Chr11:12801551 6.22E-08 transposed
Cmo08g00266 Cmo-Chr8:1638503 Cmo11g01832 Cmo-Chr11:12801551 1.61E-13 transposed
Cmo11g01268 Cmo-Chr11:8103881 Cmo11g01832 Cmo-Chr11:12801551 1.96E-09 transposed
Cmo13g00271 Cmo-Chr13:2211580 Cmo11g01832 Cmo-Chr11:12801551 8.38E-07 transposed
Cmo14g01350 Cmo-Chr14:11205695 Cmo11g01832 Cmo-Chr11:12801551 3.17E-35 transposed
Cmo17g00537 Cmo-Chr17:5331682 Cmo11g01832 Cmo-Chr11:12801551 1.36E-15 transposed
Cmo18g00537 Cmo-Chr18:4015324 Cmo11g01832 Cmo-Chr11:12801551 1.38E-58 transposed
Cmo19g01009 Cmo-Chr19:8939561 Cmo11g01832 Cmo-Chr11:12801551 1.10E-13 transposed
Cmo20g01160 Cmo-Chr20:11430419 Cmo11g01832 Cmo-Chr11:12801551 2.52E-22 transposed
Cmo11g01832 Cmo-Chr11:12801551 Cmo19g00879 Cmo-Chr19:8410679 3.75E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01832 - - csv:101218726 1429.85