Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01837 ATGTCTCAAAATTCTAAGTTATCTTGTTCCAATGTCATATTACCTGCTGGGTTGAAGGCGAAGAGGGCTAGGGAGCATTTCCATGGCCAACGGTGGAGTAATCTTCTTTATCTCTTGCCATTTGGCGTCATTTTGATTGTGGGTCTTTGGTATATTTTGAGTCTTTGTGATGGGAATTCTGTTCGAGAAGTGGAGATTCCTGATACGTGTAAAGAGAAGGCTTGGAACTTGCTGAAGCATTACAATGTTAGTGAGAGTCAGTTTCATGCTTTGGCTTCGTTCTTCTTTCATTCAGATCAGGCAGCATCTCTTCAGTGTGCTGAAGACCCAGGGCCTGGTATTGGCCTGAAAGAATGCATTGCTTGCGCTTTGAAGATGCTAGAAGAGGAGCTAAACTTGCAAAAGCAGCGTGGATGGCTTTCTGAAAATTTACAACCTGAAGGCCAGTGCCCAATTAGGGGTGAGATGGATTCCTTCAATAATGATCTATTGCAGTTAGTGGACAAGACACGCTCACTTACTTCACAATCTTCTTTTGCTTTTGTGTCTCCTTGTCATCAGATTCATGGAGAGATCTTGCATTCTAAGGAAATTGGAAACGAGCAGTCGCGAAGTTTGAACGGATTAGTAATGGCGTGTTTATGGATCCTTGCTGTAGTGATATCATGTCTGAAGATGTCTAGTTTTCATTTGAAACTAAGGAACCATAAGCATAAGCCAATAAAGCATCCCACGGTCGAGAAGCAGCCAATGATTCAACTGCAGCAAGTGTTGCTACAGAAGAAGCAGTTAGATCTATCTCCAAGTCCTCCTAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTACTTGGAGTTATTGGATCCTTTTGGCTCTTTTGGTATTTAAACAACAAAATCATCCTGAGGAGAGAAGAAACACTTGCGAACATGTGTGATGAGCGAGCTCGAATGTTACAGGACCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCACCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACGTCTTTTGAGCGACCACTAACCAGCGGCGTGGCATATGCTTTGAAAGTTAACCATTCAGAAAGAAAACAATTTGAAGAGGAACACGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACTCTTGTTCAGGATTGTATTCCTGAGAATTTGGATCCTGCTCCCTTTCAGGATGAATATGCCCCTGTGATATTTTCACAAGAAACTGTATCACATATAGTTTCCATCGACATGATGTCGGGAAAGGAAGACCGCGAAAACATCTTACGAGCAAGGGCTTCGGGGAAGGGAGTACTGACATCGCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTACTCACTTTTGCTGTCTATAACACTGACCTTCCTCCTGATGCAACACCAGAGCAACGTACTGAAGCTACTGTTGGGTATCTCGGAGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCCAGCAAACAGTCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGGTCCCATCAAGATGTATGGTTCTGATGTGGTTGATACTGGTCTATTGCACATTAGCAACCTAGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGATGCCTCAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTTGTTATTACTTTACTCGTTGGACATATATTTTATGCGGCGATAAGTCGAATCGCAAAAGTGGAGAATGACGTTCGTGAGATGATGAAACTCAAAACTCGTGCTGAAGCTGCAGATGTGGCAAAGTCTCAGTTTCTTGCTACTGTTTCTCATGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACAGGACTATGCCCAAACTGCATATGATAGTGGGAAAGAATTGATATCACTAATAAATGAGGTTCTTGATCAAGCTAAAATAGAATCAGGCAGGCTTGAACTCGAAGATGTACCGTTCGATCCACGAGCTTTACTGGATAATGTGCTGTCGATGTTCTCTGGAAAATGCCATGAAAAGGGGATAGAGTTAGCTGTTTATGTCTCTAATCTAGTCCCGGAAGTCCTCATTGGCGACCCGGGACGCTTTCGGCAGATAATCACCAATCTTGTGGGAAACTCAATTAAGTTCACCAACGACAAAGGACATATATTCGTTACCGTGCACCTAGCAGACGAACTGAATACTCCGCTTGATGCGATGGACAGTGTGCTAAGACAAGGCTTAGATTTAGTAAAAGAGACGTCGAAAAAAAGTCATAATACATTAAGCGGGTTTCCAGTTGTTGAAAGGTGCAAGAGTTGGGAGCATTTCGAGATATTTAGTAGAACGGATGCGATGAAGGAAGACGACTTAATTAAATTGCTTGTATCGGTCGAGGATACAGGCCATGGAATTCCTTTACAAGCACAAAGTCGAATATTTACGCCTTTTATGCAAGCTGATAGTTCGACTTCGCGTAAGTATGGTGGGACTGGAATAGGGCTGAGCATCAGCAAATGTCTGGTGGAACTAATGGGTGGAGAGATAGGTTTTGTGAGCCATCCTAGTGTTGGCAGCACATTTTCGTTTACTGGATGTTTGAGAAAAGGCGATCCAAGGTCTCTCGATACAAAGTGGCAGCAGAACGATCCAACCGTATTGGATTTCCGAGGACTGCAAGCGTTGGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTCAGTAGATATAGTTTCGAGTCTGGTTTCAGCGCACGAATACGTAAAGAACAATTGCATCAAAAGTCCATCCAAGTCATTGGCCATGGTGCTTATCGACAAAGATGTATGGGATAACCAAACCGGTCCGACGATCGCTCATGTATTTAAAGAACATGGGGTAAATGGCAAAGAAGAATCAACACGAAGTCCTAAGATCTTTCTGTTGGCTACCTCTGATCTTCAAGAGACGAGAGCTCTTAAGTCGACCGGTTATATTAATAATGTAATGACGAAACCTCTTAGGTTGGGTGTCTTGATTGGATGCTTCCAGGAAGCTTTCGGGAAGGTAAATCGAAAGAAGCCGTCGATTCTCGGGAACTTACTGAGGGAGAAGCAAATACTGGTGGTCGATGACAATGCCGTTAATAGACGAGTCGCAGAAGGCGCTCTAAAGAAATACGGAGCCAAGGTTACCTGTGTGGAAAGTGGTAGAGCTGCTATTTCCTTGTTGAAACCACCACACAAGTTCCATGCCTGCTTCATGGATCTTCAGATGCCTGAGATGGACGGGTTTACAGCAACACGAGAGATACGAAATATCGAAAAGAAGGTTAACAAGGACATTGCTTCTGGGAAAGCATCAAGTGATATGTTTGGGAATGTGGCTGTTTGGCATACACCAGTGTTGGCCATGACAGCTGATGTGATTCAAGCTACAAGTGAAGCATGCATGGCCTGCGGGATGGATGGTTATGTCGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCTGTAGCTAGATTCTTCGAGTCTGATGGCGGGACTAGAATATGA 3711 43.12 MSQNSKLSCSNVILPAGLKAKRAREHFHGQRWSNLLYLLPFGVILIVGLWYILSLCDGNSVREVEIPDTCKEKAWNLLKHYNVSESQFHALASFFFHSDQAASLQCAEDPGPGIGLKECIACALKMLEEELNLQKQRGWLSENLQPEGQCPIRGEMDSFNNDLLQLVDKTRSLTSQSSFAFVSPCHQIHGEILHSKEIGNEQSRSLNGLVMACLWILAVVISCLKMSSFHLKLRNHKHKPIKHPTVEKQPMIQLQQVLLQKKQLDLSPSPPKGAGKWRKKLLIIFVLLGVIGSFWLFWYLNNKIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTSFERPLTSGVAYALKVNHSERKQFEEEHGWTIKKMGTEDQTLVQDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRTEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASGPIKMYGSDVVDTGLLHISNLDFGDPQRKHEMHCRFKQMPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDVREMMKLKTRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQQDYAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTNDKGHIFVTVHLADELNTPLDAMDSVLRQGLDLVKETSKKSHNTLSGFPVVERCKSWEHFEIFSRTDAMKEDDLIKLLVSVEDTGHGIPLQAQSRIFTPFMQADSSTSRKYGGTGIGLSISKCLVELMGGEIGFVSHPSVGSTFSFTGCLRKGDPRSLDTKWQQNDPTVLDFRGLQALVIDNRSIRAEVTKYHLKRLGISVDIVSSLVSAHEYVKNNCIKSPSKSLAMVLIDKDVWDNQTGPTIAHVFKEHGVNGKEESTRSPKIFLLATSDLQETRALKSTGYINNVMTKPLRLGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAAISLLKPPHKFHACFMDLQMPEMDGFTATREIRNIEKKVNKDIASGKASSDMFGNVAVWHTPVLAMTADVIQATSEACMACGMDGYVAKPFEEEKLYSAVARFFESDGGTRI 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12825491 12835699 + CmoCh11G018370.1 Cmo11g01837 392456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01837 1236 CDD HATPase_EvgS-ArcB-TorS-like 751 916 - -
Cmo11g01837 1236 SMART HKATPase_4 746 918 IPR003594 -
Cmo11g01837 1236 SMART REC_2 1090 1224 IPR001789 GO:0000160
Cmo11g01837 1236 Pfam CHASE domain 352 546 IPR006189 -
Cmo11g01837 1236 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 619 700 IPR036097 GO:0000155|GO:0007165
Cmo11g01837 1236 Pfam His Kinase A (phospho-acceptor) domain 634 699 IPR003661 GO:0000155|GO:0007165
Cmo11g01837 1236 ProSiteProfiles Response regulatory domain profile. 1091 1228 IPR001789 GO:0000160
Cmo11g01837 1236 ProSiteProfiles Histidine kinase domain profile. 641 918 IPR005467 -
Cmo11g01837 1236 PANTHER HISTIDINE KINASE 2 268 1230 - -
Cmo11g01837 1236 Gene3D - 300 352 - -
Cmo11g01837 1236 Gene3D - 58 103 - -
Cmo11g01837 1236 SMART CHASE_2 349 548 IPR006189 -
Cmo11g01837 1236 Gene3D - 698 918 IPR036890 -
Cmo11g01837 1236 Gene3D - 1085 1231 - -
Cmo11g01837 1236 Gene3D - 935 1077 - -
Cmo11g01837 1236 ProSiteProfiles Response regulatory domain profile. 942 1072 IPR001789 GO:0000160
Cmo11g01837 1236 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 688 913 IPR036890 -
Cmo11g01837 1236 SUPERFAMILY CheY-like 937 1073 IPR011006 -
Cmo11g01837 1236 PANTHER TWO-COMPONENT HISTIDINE KINASE 268 1230 - -
Cmo11g01837 1236 Gene3D CHASE domain 353 579 IPR042240 -
Cmo11g01837 1236 CDD HisKA 634 695 IPR003661 GO:0000155|GO:0007165
Cmo11g01837 1236 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 746 913 IPR003594 -
Cmo11g01837 1236 SUPERFAMILY CheY-like 1088 1228 IPR011006 -
Cmo11g01837 1236 Gene3D - 606 697 - -
Cmo11g01837 1236 SMART HisKA_10 634 699 IPR003661 GO:0000155|GO:0007165
Cmo11g01837 1236 PRINTS Bacterial sensor protein C-terminal signature 843 857 IPR004358 GO:0016310|GO:0016772
Cmo11g01837 1236 PRINTS Bacterial sensor protein C-terminal signature 861 871 IPR004358 GO:0016310|GO:0016772
Cmo11g01837 1236 PRINTS Bacterial sensor protein C-terminal signature 878 896 IPR004358 GO:0016310|GO:0016772
Cmo11g01837 1236 Coils Coil 611 631 - -
Cmo11g01837 1236 Pfam Response regulator receiver domain 1092 1176 IPR001789 GO:0000160
Cmo11g01837 1236 CDD REC_hyHK_CKI1_RcsC-like 1092 1224 - -
Cmo11g01837 1236 ProSiteProfiles CHASE domain profile. 349 573 IPR006189 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00226 Cmo-Chr2:1044451 Cmo11g01837 Cmo-Chr11:12825491 0 dispersed
Cmo08g00183 Cmo-Chr8:1074486 Cmo11g01837 Cmo-Chr11:12825491 0 dispersed
Cmo11g01837 Cmo-Chr11:12825491 Cmo17g01385 Cmo-Chr17:10735030 0 dispersed
Cmo11g01837 Cmo-Chr11:12825491 Cmo20g00674 Cmo-Chr20:3286073 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10655 PF03924 CHASE 6.90E-36 CL0165 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01837 K14489 - tcc:18612437 1577.38