Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01838 ATGGTTTCTTCAGGGGACCAAATAGAGACTAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCATTTAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGTGGAACTAATGCATCAAACTGTGATCACAAAAGCACTGCGGCTTCCACGGAGACACTTGAAGAGGCTGTTAAGCAGCCTGACGTTACAATCCCACTAGTGGATCGAGGAGATATCTCTAATGTAGTGTCTGAGAAAGTGACCCAGAACCCAATTCATGCGGATCAGGACTCGCATCCTGACTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGATATTATTTACTTTGGCCCACACGATCACCCTAGACCTCAACCTCACATTCCTGTTGCTGTTGGAGTTGTTAACATGGTTGAAGAAAAACTAGATGATCATGCTTCCAGAAGTTCACAAGATAAGCCCTCCACTGCACTTGGCCAGACACCTCGTAAAACTGAGCCGGGTGATGCGCTTCAACTGTCATTAGACATGGCCAATGATAAGGAAAAAGATGAAGCTTCGAAAAGGTCTAGGATCAATGATGAGGTGGACAGTGATGATACACGAGACTTGAAACGAGAGAAGAAAATATGTAATATTGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCTCGTGTTGTTGTTCAAACTCCCAGTGAGGTTGACATTGTTAACGATGGATACCGCTGGCGGAAGTACGGACAGAAACTAGTGAAAGGCAATCCAAATCCTAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCATCTCATGATCCAAAAGTGGTTCTTACCACGTATGAGGGTCATCATGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACTCAGCTGGGTCCACAGCAGCCCACAGTGATGAGATGAAAACAAAAACGGTCGGTAGTTCTATTGGCCAGGATACGGTGGTTCATGCTAATAAGGATCCTCCAAGCAATTCAAGTTCTGAAGACAAATTAATTGAAACGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATAGAATTGTCCTCGACATGGTGGTATACCAGGCAAGGAGTTTCGAGTGCTCGAAATAA 1266 44.0 MVSSGDQIETKVDSDRLEHEQSSFSQSQASQEDPGGTNASNCDHKSTAASTETLEEAVKQPDVTIPLVDRGDISNVVSEKVTQNPIHADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDIIYFGPHDHPRPQPHIPVAVGVVNMVEEKLDDHASRSSQDKPSTALGQTPRKTEPGDALQLSLDMANDKEKDEASKRSRINDEVDSDDTRDLKREKKICNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRCSSPGCPVKKHVERASHDPKVVLTTYEGHHDHDMPPARTVTLNSAGSTAAHSDEMKTKTVGSSIGQDTVVHANKDPPSNSSSEDKLIETNGKSNATEASDRIVLDMVVYQARSFECSK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12836938 12839374 - CmoCh11G018380.1 Cmo11g01838 392457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01838 421 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 402 - -
Cmo11g01838 421 SUPERFAMILY WRKY DNA-binding domain 274 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 MobiDBLite consensus disorder prediction 187 246 - -
Cmo11g01838 421 MobiDBLite consensus disorder prediction 352 397 - -
Cmo11g01838 421 Pfam WRKY DNA -binding domain 283 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 SUPERFAMILY WRKY DNA-binding domain 104 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 MobiDBLite consensus disorder prediction 1 55 - -
Cmo11g01838 421 ProSiteProfiles WRKY domain profile. 277 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 Gene3D WRKY domain 95 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 SMART WRKY_cls 109 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 SMART WRKY_cls 282 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 402 IPR044810 GO:0003700
Cmo11g01838 421 MobiDBLite consensus disorder prediction 220 246 - -
Cmo11g01838 421 Gene3D WRKY domain 269 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g01838 421 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01838 Cmo-Chr11:12836938 Cmo16g00982 Cmo-Chr16:6726015 8.64E-69 dispersed
Cmo11g01838 Cmo-Chr11:12836938 Cmo06g00665 Cmo-Chr6:3368431 2.99E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10656 PF03106 WRKY 3.20E-22 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01838 K18834 - csv:101212482 605.134