Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01838 | ATGGTTTCTTCAGGGGACCAAATAGAGACTAAAGTTGATTCTGATAGATTGGAGCATGAACAAAGTTCATTTAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGTGGAACTAATGCATCAAACTGTGATCACAAAAGCACTGCGGCTTCCACGGAGACACTTGAAGAGGCTGTTAAGCAGCCTGACGTTACAATCCCACTAGTGGATCGAGGAGATATCTCTAATGTAGTGTCTGAGAAAGTGACCCAGAACCCAATTCATGCGGATCAGGACTCGCATCCTGACTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCAACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATTACAGATATTATTTACTTTGGCCCACACGATCACCCTAGACCTCAACCTCACATTCCTGTTGCTGTTGGAGTTGTTAACATGGTTGAAGAAAAACTAGATGATCATGCTTCCAGAAGTTCACAAGATAAGCCCTCCACTGCACTTGGCCAGACACCTCGTAAAACTGAGCCGGGTGATGCGCTTCAACTGTCATTAGACATGGCCAATGATAAGGAAAAAGATGAAGCTTCGAAAAGGTCTAGGATCAATGATGAGGTGGACAGTGATGATACACGAGACTTGAAACGAGAGAAGAAAATATGTAATATTGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCTCGTGTTGTTGTTCAAACTCCCAGTGAGGTTGACATTGTTAACGATGGATACCGCTGGCGGAAGTACGGACAGAAACTAGTGAAAGGCAATCCAAATCCTAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCATCTCATGATCCAAAAGTGGTTCTTACCACGTATGAGGGTCATCATGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACTCAGCTGGGTCCACAGCAGCCCACAGTGATGAGATGAAAACAAAAACGGTCGGTAGTTCTATTGGCCAGGATACGGTGGTTCATGCTAATAAGGATCCTCCAAGCAATTCAAGTTCTGAAGACAAATTAATTGAAACGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATAGAATTGTCCTCGACATGGTGGTATACCAGGCAAGGAGTTTCGAGTGCTCGAAATAA | 1266 | 44.0 | MVSSGDQIETKVDSDRLEHEQSSFSQSQASQEDPGGTNASNCDHKSTAASTETLEEAVKQPDVTIPLVDRGDISNVVSEKVTQNPIHADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDIIYFGPHDHPRPQPHIPVAVGVVNMVEEKLDDHASRSSQDKPSTALGQTPRKTEPGDALQLSLDMANDKEKDEASKRSRINDEVDSDDTRDLKREKKICNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRCSSPGCPVKKHVERASHDPKVVLTTYEGHHDHDMPPARTVTLNSAGSTAAHSDEMKTKTVGSSIGQDTVVHANKDPPSNSSSEDKLIETNGKSNATEASDRIVLDMVVYQARSFECSK | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12836938 | 12839374 | - | CmoCh11G018380.1 | Cmo11g01838 | 392457 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01838 | 421 | PANTHER | WRKY TRANSCRIPTION FACTOR 1 | 1 | 402 | - | - | |
Cmo11g01838 | 421 | SUPERFAMILY | WRKY DNA-binding domain | 274 | 338 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | MobiDBLite | consensus disorder prediction | 187 | 246 | - | - | |
Cmo11g01838 | 421 | MobiDBLite | consensus disorder prediction | 352 | 397 | - | - | |
Cmo11g01838 | 421 | Pfam | WRKY DNA -binding domain | 283 | 335 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | Pfam | WRKY DNA -binding domain | 110 | 166 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | ProSiteProfiles | WRKY domain profile. | 104 | 168 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | SUPERFAMILY | WRKY DNA-binding domain | 104 | 168 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cmo11g01838 | 421 | ProSiteProfiles | WRKY domain profile. | 277 | 338 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | Gene3D | WRKY domain | 95 | 169 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | SMART | WRKY_cls | 109 | 167 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | SMART | WRKY_cls | 282 | 337 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 1 | 402 | IPR044810 | GO:0003700 | |
Cmo11g01838 | 421 | MobiDBLite | consensus disorder prediction | 220 | 246 | - | - | |
Cmo11g01838 | 421 | Gene3D | WRKY domain | 269 | 331 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01838 | 421 | MobiDBLite | consensus disorder prediction | 21 | 54 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01838 | Cmo-Chr11:12836938 | Cmo16g00982 | Cmo-Chr16:6726015 | 8.64E-69 | dispersed | |
Cmo11g01838 | Cmo-Chr11:12836938 | Cmo06g00665 | Cmo-Chr6:3368431 | 2.99E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10656 | PF03106 | WRKY | 3.20E-22 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01838 | K18834 | - | csv:101212482 | 605.134 |