Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01873 ATGGCTTCTGTTCTCTTCCTTTTTCTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTGATATTCTCGCTGAATCAAGAAGGACTGTATCTTCAGCAAGTCAAACTCAGTCTCTCCGATCCTACTCAGTCCTTATCTTCATGGAACCCTCGCGATGATACTCCCTGCAACTGGTCCGGCGTCATCTGCGATTCCGTCTCTCGTTCTGTTGTCGCCGTCGACTTATCTGATTTCCAGCTCGCTGGACCTTTTCCGACCTTCTTTTGTCGACTTCCTTCTCTTTCTTCACTCTCTCTTTTCAATAATGCCATTAACGCTTCTCTTCCTGACGATATTGCCTCCTGTTCTGGTCTCCAGCGGCTTAACTTGTCGCAAAATTTCCTCGCTGGTTCTATTCCCGATGCGCTTTCCAAGATCACGAACCTTCGGTTACTGGATCTCTCTGGAAATAACTTTTCCGGGGAGATTCCGGTGAGTTTCGGTGAGTTTCGTAGGCTTGAGACGCTGAATTTGGTTGAAAATCTTTTGAATGGAACTATTCCGGGGAGTTTGGGTAATATTTCGAGTTTGAAAGAGCTTCAACTTGCGTATAATCCGTTTTCGCGGAGTGAGATTCCGAGTGCATTTGGGAACTTGACGAAGTTGGAGGTTCTTTGGCTTGCTAACTGTAATCTTGTCGATCGGATTCCGGATATTTTTGGCGGGATGACTCGGCTTAAGAATCTGGACTTGTCGAACAATAGACTCAGTGGGTCGATTCCGGTGTCAATCACTCATTTGAAAAGCTTAGTTCAGATTGAACTGTTTAACAACTCGCTCTTCGGCGAGTTTCCTTTGGGACTGTCGAATCTAACAGCACTGCGACGAATTGATGTGTCGATGAATCACTTAACTGGAACAATTCCGGATGATCTTTGTGCATTACAGCTTGAGTCGTTAAACTTGTTCGAGAATCGATTGGAAGGGCCATTGCCGGAGAGTATCGTCAGGTCCCCATATTTGAATGAGCTCAAATTGTTTAATAACAAGCTTAGCGGACAGTTACCCAGCAAACTTGGGCAAAACTCGCCATTAGTGCATCTTGATGTTTCATACAACGGATTTTCTGGCGCCATCCCGGAAAACTTGTGTGCAAAAGGGGCATTGGAAGAGCTTATATTGATTTACAACTCGTTTTCCGGGAAAATCCCTCCGAGTCTTGGAAAATGCACGAGCTTAAGCCGTGTTCGAATGAGGAACAACAAACTCTCGGGTTCAGTTCCAGATGATTTTTGGGGTTTGCACAACGTGTATTTACTTGAGCTCGTTGAAAATTCGCTCTCTGGGTCTATTTCTTCGAAGATATCTAGCGCCAAGAATCTCTCCATTTTGATGATCTCCGAAAATCAATTTTCAGGGTCAATTCCGGAGGAGATTGGTTCGTTAAGCAATCTGACTGAACTTTCAGGTAGTGAGAATATGTTTTCCGGTAAAATTCCGGGAAATTTAGTGAAGTTAAGCCAGTTGGGTAAACTCGATCTAAGCGATAACAAGCTTTCTGGTGAATTACCAAAGGGAATTGGAGCTCTGAAGAGGCTAAACGAGCTAAATTTGGCAAACAACAGGCTATCTGGGAATATCCCGAGTGAAATTGGAAGCCTACCTGTTCTTAATTATCTCGATCTTGCTAGTAACCATCTCAGTGGTAGCATACCTCTTGAATTGCAGAATTTGAAACTGAATTCGTTAAATCTGTCGAACAATCTCTTATCAGGAGCACTTCCTCCTCTTTATGCCGAGGAAATTTACAGAGATAGCTTTCTGGGTAATCCAGGTTTGTGTAAGAACACCCCAAGTCTTTGTCCTCGCATTGAAAAAGGCAAAAACCAAGGCTATTGGCTTCTCAAAGCCATTTTTCTACTCGCTATTGTTGTTTTTGCTGTTGGGGTCATTTGGTTCTTCTTTAAGTACAAGAAATTCAAGCAGAACAAGAATGGAATTGCGGTTTCGAAGTGGAAATCATTCCACAAACTTGGTTTCAGTGAATATGAAATCGCAGTCTCTCTCAGTGAAGACAAAGTCATCGGAAGTGGAGCATCCGGCAAAGTGTACAAAGTTGTGCTGAAAAACGGTGAGATCGTGGCCGTGAAGAAGCTATGGCAAGGAGCAAGGAAAGAGGACAACAGTTTAGATTCAGAGAAGGATGGATTTGAGGCTGAAGTTGAGACATTGGGGAAGATTCGCCATAAGAACATTGTTAGGCTATGGTGCTGCTGCAACACTAGCAACTGCAAGCTACTTGTTTACGAGTACATGCCTAATGGGAGCTTGGGAGATTTGCTGCACGGCAGCAGAAAGAGGTTTTTGGATTGGCCGACAAGGTATAAAGTAGCTTTGGATGCAGCTGAAGGCCTTTCTTACTTGCATCACGATTGTGCTCCTCCAATTGTTCATAGAGATATCAAATCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCAGACTTTGGATTAGCTAAGTTCTTGAATTCTGGCAAGGACTCAGAGCCAATGTCTGTCATTGCTGGTTCTTGTGGGTATATTGCACCAGAATATGCTTATACATTAAGAGTAAACGAAAAGAGTGACATCTACAGCTTTGGAATGGTGATTTTAGAGCTGGTGACAGGGAGGCCTCCAAATGATCCAGAATTTGGAGATAAAAACTTGGCAAACTGGGTCTACACCACCGTCGACTGCAGAGGACTCGACCAAGCAATCGATCCGAAACTCGGTTCAAAATACAAGGAAGAAATCTACCGAGTCCTCAACGTGGGACTTCTCTGCACAAGCTCACTCCCCATCAACCGTCCTTCGATGAGACGAGTCGTCAAACTGCTACAAGAGGCTGCAACAGAATCCAGACCCGCCATTGCTAGTAAGGAAACCAAACTTTCTCCACATTTTTCCTAG 2946 43.82 MASVLFLFLLRLLLLLLLLLPLIFSLNQEGLYLQQVKLSLSDPTQSLSSWNPRDDTPCNWSGVICDSVSRSVVAVDLSDFQLAGPFPTFFCRLPSLSSLSLFNNAINASLPDDIASCSGLQRLNLSQNFLAGSIPDALSKITNLRLLDLSGNNFSGEIPVSFGEFRRLETLNLVENLLNGTIPGSLGNISSLKELQLAYNPFSRSEIPSAFGNLTKLEVLWLANCNLVDRIPDIFGGMTRLKNLDLSNNRLSGSIPVSITHLKSLVQIELFNNSLFGEFPLGLSNLTALRRIDVSMNHLTGTIPDDLCALQLESLNLFENRLEGPLPESIVRSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGAIPENLCAKGALEELILIYNSFSGKIPPSLGKCTSLSRVRMRNNKLSGSVPDDFWGLHNVYLLELVENSLSGSISSKISSAKNLSILMISENQFSGSIPEEIGSLSNLTELSGSENMFSGKIPGNLVKLSQLGKLDLSDNKLSGELPKGIGALKRLNELNLANNRLSGNIPSEIGSLPVLNYLDLASNHLSGSIPLELQNLKLNSLNLSNNLLSGALPPLYAEEIYRDSFLGNPGLCKNTPSLCPRIEKGKNQGYWLLKAIFLLAIVVFAVGVIWFFFKYKKFKQNKNGIAVSKWKSFHKLGFSEYEIAVSLSEDKVIGSGASGKVYKVVLKNGEIVAVKKLWQGARKEDNSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTSNCKLLVYEYMPNGSLGDLLHGSRKRFLDWPTRYKVALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNSGKDSEPMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGMVILELVTGRPPNDPEFGDKNLANWVYTTVDCRGLDQAIDPKLGSKYKEEIYRVLNVGLLCTSSLPINRPSMRRVVKLLQEAATESRPAIASKETKLSPHFS 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13048466 13052625 + CmoCh11G018730.1 Cmo11g01873 392492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01873 981 SUPERFAMILY L domain-like 360 592 - -
Cmo11g01873 981 PRINTS Leucine-rich repeat signature 241 254 - -
Cmo11g01873 981 PRINTS Leucine-rich repeat signature 501 514 - -
Cmo11g01873 981 SUPERFAMILY Protein kinase-like (PK-like) 684 958 IPR011009 -
Cmo11g01873 981 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 9 977 - -
Cmo11g01873 981 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Cmo11g01873 981 Pfam Leucine rich repeat 216 275 IPR001611 GO:0005515
Cmo11g01873 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 977 - -
Cmo11g01873 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cmo11g01873 981 SMART LRR_typ_2 141 165 IPR003591 -
Cmo11g01873 981 SMART LRR_typ_2 214 237 IPR003591 -
Cmo11g01873 981 SMART LRR_typ_2 501 524 IPR003591 -
Cmo11g01873 981 SMART LRR_typ_2 286 310 IPR003591 -
Cmo11g01873 981 SMART LRR_typ_2 525 549 IPR003591 -
Cmo11g01873 981 SMART LRR_typ_2 189 213 IPR003591 -
Cmo11g01873 981 SMART LRR_typ_2 238 262 IPR003591 -
Cmo11g01873 981 SMART LRR_typ_2 93 117 IPR003591 -
Cmo11g01873 981 SUPERFAMILY RNI-like 71 376 - -
Cmo11g01873 981 Gene3D Phosphorylase Kinase; domain 1 665 766 - -
Cmo11g01873 981 Gene3D Ribonuclease Inhibitor 191 310 IPR032675 -
Cmo11g01873 981 Pfam Protein kinase domain 686 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01873 981 Gene3D Ribonuclease Inhibitor 311 619 IPR032675 -
Cmo11g01873 981 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cmo11g01873 981 ProSiteProfiles Protein kinase domain profile. 684 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01873 981 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Cmo11g01873 981 ProSiteProfiles Leucine-rich repeat profile. 240 263 IPR001611 GO:0005515
Cmo11g01873 981 SMART serkin_6 684 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01873 981 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Cmo11g01873 981 Gene3D Transferase(Phosphotransferase) domain 1 767 977 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01288 Cmo-Chr3:9748626 Cmo11g01873 Cmo-Chr11:13048466 0 dispersed
Cmo10g00700 Cmo-Chr10:3208478 Cmo11g01873 Cmo-Chr11:13048466 0 dispersed
Cmo11g01873 Cmo-Chr11:13048466 Cmo18g00374 Cmo-Chr18:2433680 0 dispersed
Cmo11g01873 Cmo-Chr11:13048466 Cmo13g00644 Cmo-Chr13:6856844 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74696 PF00069 Pkinase 2.30E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01873 - - csv:101208240 1605.88