Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01874 | ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCTTGCCAACACTTGGATCAAACAACAACCCTCCTGTTCTTAAGAAGAAGAGGAATCTCCCCGGAAATCCAGATCCAAAGGCGGAAGTCGTGGCATTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGACATATGTGGGAAGGGTTTCCAGAGGGATCAGAACCTACAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGCTGTGTGCACCACCATCCTTCAAGGGCGCTTGGAGACCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGCATGGCCTTAGCAGAGGAAACAGCAAGACTAAACGCAGCAGCATCAACCCTGAACACAGCTGACAACAGCTACCATTTCCTAAGACCAAACACAAATCCTCACCAATACTTCCCCTCCTCCACCCTTTTCAGACAAGATCATGAAACTTCTCAAATGTTCCTCAACAACAACGTTAATTCCCTCACACCCACAATAGCCTTCCCTTTTTGGATGCCAAATTCTTCCCCCCAAGACAATAATTTCCATCACCCACTTGCACCACCACCACCGCCGCCGCCGCCACCACCACCAACAGCAACAACAACAAGCTGTCTTCTTTCAGTTCCTTCCTTGTACAGCCACGAAGAACAAGCCAATCAAGCAATGGCATCATCATCAGCAGCAGCAGCAGCAGCAGCCAACATGTCAGCCACTGTTCTGCTACAAAAGGCTGCTGAAATGGCAGTGACAAGCTCCACAACAACAGACCCATCATCATTAATGGCAAGTTTTGGGTTGAAATTCAGTGCCACAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATTAACTCAAATTCCATTCCTAGTTGTTGCAGCCTTGAAAATGGTGGCGATCATCAAGACTCTGCTGCTAGTAACTTGATCCAAATGTACCCTGCTGCAAAGAGAATTAGACACACTGTTAGTGAAGAAAGTGTCACGGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATCCCCACCATATGCCATCATCCATCAGCAGTGAATGGATGGATGTGA | 1326 | 46.61 | MSEEQTISNAFICSLPTLGSNNNPPVLKKKRNLPGNPDPKAEVVALSPKTLMATNRFLCDICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAAASTLNTADNSYHFLRPNTNPHQYFPSSTLFRQDHETSQMFLNNNVNSLTPTIAFPFWMPNSSPQDNNFHHPLAPPPPPPPPPPPTATTTSCLLSVPSLYSHEEQANQAMASSSAAAAAAANMSATVLLQKAAEMAVTSSTTTDPSSLMASFGLKFSATTDGKALFSGLYGSINSNSIPSCCSLENGGDHQDSAASNLIQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGIPTICHHPSAVNGWM | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13053925 | 13056618 | - | CmoCh11G018740.1 | Cmo11g01874 | 392493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01874 | 441 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 22 | 433 | - | - | |
Cmo11g01874 | 441 | Gene3D | Classic Zinc Finger | 93 | 183 | - | - | |
Cmo11g01874 | 441 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 433 | - | - | |
Cmo11g01874 | 441 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 270 | 280 | - | - | |
Cmo11g01874 | 441 | MobiDBLite | consensus disorder prediction | 261 | 285 | - | - | |
Cmo11g01874 | 441 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Cmo11g01874 | 441 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Cmo11g01874 | 441 | MobiDBLite | consensus disorder prediction | 265 | 283 | - | - | |
Cmo11g01874 | 441 | Gene3D | Classic Zinc Finger | 53 | 80 | - | - | |
Cmo11g01874 | 441 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Cmo11g01874 | 441 | SMART | c2h2final6 | 135 | 155 | IPR013087 | - | |
Cmo11g01874 | 441 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 155 | IPR036236 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01874 | Cmo20g00655 | CCT | |
Cmo02g00202 | Cmo11g01874 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01874 | Cmo-Chr11:13053925 | Cmo14g00196 | Cmo-Chr14:889620 | 1.52E-111 | dispersed | |
Cmo11g01874 | Cmo-Chr11:13053925 | Cmo02g00202 | Cmo-Chr2:947623 | 9.80E-119 | wgd | |
Cmo11g01874 | Cmo-Chr11:13053925 | Cmo20g00655 | Cmo-Chr20:3205336 | 5.17E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10657 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01874 | K25870 | - | csv:101207997 | 577.785 |