Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01874 ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCTTGCCAACACTTGGATCAAACAACAACCCTCCTGTTCTTAAGAAGAAGAGGAATCTCCCCGGAAATCCAGATCCAAAGGCGGAAGTCGTGGCATTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGACATATGTGGGAAGGGTTTCCAGAGGGATCAGAACCTACAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGCTGTGTGCACCACCATCCTTCAAGGGCGCTTGGAGACCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGCATGGCCTTAGCAGAGGAAACAGCAAGACTAAACGCAGCAGCATCAACCCTGAACACAGCTGACAACAGCTACCATTTCCTAAGACCAAACACAAATCCTCACCAATACTTCCCCTCCTCCACCCTTTTCAGACAAGATCATGAAACTTCTCAAATGTTCCTCAACAACAACGTTAATTCCCTCACACCCACAATAGCCTTCCCTTTTTGGATGCCAAATTCTTCCCCCCAAGACAATAATTTCCATCACCCACTTGCACCACCACCACCGCCGCCGCCGCCACCACCACCAACAGCAACAACAACAAGCTGTCTTCTTTCAGTTCCTTCCTTGTACAGCCACGAAGAACAAGCCAATCAAGCAATGGCATCATCATCAGCAGCAGCAGCAGCAGCAGCCAACATGTCAGCCACTGTTCTGCTACAAAAGGCTGCTGAAATGGCAGTGACAAGCTCCACAACAACAGACCCATCATCATTAATGGCAAGTTTTGGGTTGAAATTCAGTGCCACAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATTAACTCAAATTCCATTCCTAGTTGTTGCAGCCTTGAAAATGGTGGCGATCATCAAGACTCTGCTGCTAGTAACTTGATCCAAATGTACCCTGCTGCAAAGAGAATTAGACACACTGTTAGTGAAGAAAGTGTCACGGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATCCCCACCATATGCCATCATCCATCAGCAGTGAATGGATGGATGTGA 1326 46.61 MSEEQTISNAFICSLPTLGSNNNPPVLKKKRNLPGNPDPKAEVVALSPKTLMATNRFLCDICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAAASTLNTADNSYHFLRPNTNPHQYFPSSTLFRQDHETSQMFLNNNVNSLTPTIAFPFWMPNSSPQDNNFHHPLAPPPPPPPPPPPTATTTSCLLSVPSLYSHEEQANQAMASSSAAAAAAANMSATVLLQKAAEMAVTSSTTTDPSSLMASFGLKFSATTDGKALFSGLYGSINSNSIPSCCSLENGGDHQDSAASNLIQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGIPTICHHPSAVNGWM 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13053925 13056618 - CmoCh11G018740.1 Cmo11g01874 392493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01874 441 PANTHER ZINC FINGER PROTEIN MAGPIE 22 433 - -
Cmo11g01874 441 Gene3D Classic Zinc Finger 93 183 - -
Cmo11g01874 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 433 - -
Cmo11g01874 441 SUPERFAMILY Formin homology 2 domain (FH2 domain) 270 280 - -
Cmo11g01874 441 MobiDBLite consensus disorder prediction 261 285 - -
Cmo11g01874 441 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cmo11g01874 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cmo11g01874 441 MobiDBLite consensus disorder prediction 265 283 - -
Cmo11g01874 441 Gene3D Classic Zinc Finger 53 80 - -
Cmo11g01874 441 SMART c2h2final6 57 79 IPR013087 -
Cmo11g01874 441 SMART c2h2final6 135 155 IPR013087 -
Cmo11g01874 441 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01874 Cmo20g00655 CCT
Cmo02g00202 Cmo11g01874 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01874 Cmo-Chr11:13053925 Cmo14g00196 Cmo-Chr14:889620 1.52E-111 dispersed
Cmo11g01874 Cmo-Chr11:13053925 Cmo02g00202 Cmo-Chr2:947623 9.80E-119 wgd
Cmo11g01874 Cmo-Chr11:13053925 Cmo20g00655 Cmo-Chr20:3205336 5.17E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10657 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01874 K25870 - csv:101207997 577.785