Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01879 ATGGCACAGTTGCCGCCTAAGATCCCAAACATGCAGCCGAATAATTGGCCGGAAATCTTCCCCCCCACCACCACACTTCCGGTCACCCACCAAAATCCTTCATGGGTTGACGAATTTCTTGATTTCTCTTCCTCCAGACGAGGCTCTCACCGGCGCTCCGTTAGCGATTCGATCACATTCCTCGAAATGCCAATGCCGGAGGATGATTGTCAAGGCTCCGACGCCGCGCCGACGACGGGATCTGGCAACGAATTTGATAGATTTGACGACGACCAATTCCTGTCGATGTTTAATGACGAAATCTCCGCCGCTGTTGCGCCGACTTTGTCGTCGTCGAACACCTCCACGCCGTCCGATCACAACAGCATTAACGACGAAAAAGACGGCCAACAAAGCCGGAACAAACACGAATCCGACGAAGTACAGAGTCAACAGCAATCCAAAATTCAAACGCAATCCAATTCGCCGGCGCCGGCGGCCTCCGCCGATCGGATAACAGATCCAAAAAGAGTAAAAAGAATTCTGGCAAATCGGCAATCGGCGCAAAGATCACGAGTGAGGAAGCTTCAATACATATCGGAACTTGAACGAAGCGTCACGTCGTTGCAGGCGGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCAACAGAGATTGCTTCTCAACGTCGACAACAGCGCTTTGAAGCAAAGAATCGCCGCCCTTGCACAAGATAAGATTTTTAAAGATGCTCATCAAGAGGCTCTCAAAAGAGAGATAGAGAGACTAAGACAAGTTTACCACCAACAAAACATCAAGAACAATGACAATCCACCGCCATCGTCACCGCCTCCCACCGCCATCGCCACCGACGCCAAGCTTCCGAATGTAGATCAAAAGGGCCAAGTTCTTAACGTCGTCGTTTAG 912 50.99 MAQLPPKIPNMQPNNWPEIFPPTTTLPVTHQNPSWVDEFLDFSSSRRGSHRRSVSDSITFLEMPMPEDDCQGSDAAPTTGSGNEFDRFDDDQFLSMFNDEISAAVAPTLSSSNTSTPSDHNSINDEKDGQQSRNKHESDEVQSQQQSKIQTQSNSPAPAASADRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDQQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKNNDNPPPSSPPPTAIATDAKLPNVDQKGQVLNVVV 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13083836 13086737 + CmoCh11G018790.1 Cmo11g01879 392498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01879 303 Gene3D - 168 266 - -
Cmo11g01879 303 MobiDBLite consensus disorder prediction 265 286 - -
Cmo11g01879 303 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700|GO:0006355
Cmo11g01879 303 PANTHER BASIC LEUCINE ZIPPER 61-LIKE 1 287 - -
Cmo11g01879 303 MobiDBLite consensus disorder prediction 1 25 - -
Cmo11g01879 303 SUPERFAMILY Leucine zipper domain 169 223 IPR046347 GO:0003700|GO:0006355
Cmo11g01879 303 PANTHER BASIC LEUCINE ZIPPER 34 1 287 - -
Cmo11g01879 303 MobiDBLite consensus disorder prediction 107 170 - -
Cmo11g01879 303 CDD bZIP_plant_RF2 170 220 IPR044759 GO:0003700|GO:0006355
Cmo11g01879 303 Coils Coil 248 268 - -
Cmo11g01879 303 MobiDBLite consensus disorder prediction 62 88 - -
Cmo11g01879 303 Pfam bZIP transcription factor 169 213 IPR004827 GO:0003700|GO:0006355
Cmo11g01879 303 MobiDBLite consensus disorder prediction 143 160 - -
Cmo11g01879 303 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 167 219 IPR004827 GO:0003700|GO:0006355
Cmo11g01879 303 SMART brlzneu 165 229 IPR004827 GO:0003700|GO:0006355
Cmo11g01879 303 MobiDBLite consensus disorder prediction 121 142 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01879 Cmo20g00648 CCT
Cmo11g01879 Cmo20g00648 ECH
Cmo11g01879 Cmo19g00926 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01879 Cmo-Chr11:13083836 Cmo16g00423 Cmo-Chr16:1976093 3.49E-24 dispersed
Cmo18g00962 Cmo-Chr18:10688228 Cmo11g01879 Cmo-Chr11:13083836 3.87E-21 transposed
Cmo11g01879 Cmo-Chr11:13083836 Cmo19g00926 Cmo-Chr19:8586158 6.04E-158 wgd
Cmo11g01879 Cmo-Chr11:13083836 Cmo20g00648 Cmo-Chr20:3173495 6.94E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10658 PF07716 bZIP_2 2.10E-09 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01879 - - cmax:111486081 550.436