Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01879 | ATGGCACAGTTGCCGCCTAAGATCCCAAACATGCAGCCGAATAATTGGCCGGAAATCTTCCCCCCCACCACCACACTTCCGGTCACCCACCAAAATCCTTCATGGGTTGACGAATTTCTTGATTTCTCTTCCTCCAGACGAGGCTCTCACCGGCGCTCCGTTAGCGATTCGATCACATTCCTCGAAATGCCAATGCCGGAGGATGATTGTCAAGGCTCCGACGCCGCGCCGACGACGGGATCTGGCAACGAATTTGATAGATTTGACGACGACCAATTCCTGTCGATGTTTAATGACGAAATCTCCGCCGCTGTTGCGCCGACTTTGTCGTCGTCGAACACCTCCACGCCGTCCGATCACAACAGCATTAACGACGAAAAAGACGGCCAACAAAGCCGGAACAAACACGAATCCGACGAAGTACAGAGTCAACAGCAATCCAAAATTCAAACGCAATCCAATTCGCCGGCGCCGGCGGCCTCCGCCGATCGGATAACAGATCCAAAAAGAGTAAAAAGAATTCTGGCAAATCGGCAATCGGCGCAAAGATCACGAGTGAGGAAGCTTCAATACATATCGGAACTTGAACGAAGCGTCACGTCGTTGCAGGCGGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCAACAGAGATTGCTTCTCAACGTCGACAACAGCGCTTTGAAGCAAAGAATCGCCGCCCTTGCACAAGATAAGATTTTTAAAGATGCTCATCAAGAGGCTCTCAAAAGAGAGATAGAGAGACTAAGACAAGTTTACCACCAACAAAACATCAAGAACAATGACAATCCACCGCCATCGTCACCGCCTCCCACCGCCATCGCCACCGACGCCAAGCTTCCGAATGTAGATCAAAAGGGCCAAGTTCTTAACGTCGTCGTTTAG | 912 | 50.99 | MAQLPPKIPNMQPNNWPEIFPPTTTLPVTHQNPSWVDEFLDFSSSRRGSHRRSVSDSITFLEMPMPEDDCQGSDAAPTTGSGNEFDRFDDDQFLSMFNDEISAAVAPTLSSSNTSTPSDHNSINDEKDGQQSRNKHESDEVQSQQQSKIQTQSNSPAPAASADRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDQQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKNNDNPPPSSPPPTAIATDAKLPNVDQKGQVLNVVV | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13083836 | 13086737 | + | CmoCh11G018790.1 | Cmo11g01879 | 392498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01879 | 303 | Gene3D | - | 168 | 266 | - | - | |
Cmo11g01879 | 303 | MobiDBLite | consensus disorder prediction | 265 | 286 | - | - | |
Cmo11g01879 | 303 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 172 | 187 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01879 | 303 | PANTHER | BASIC LEUCINE ZIPPER 61-LIKE | 1 | 287 | - | - | |
Cmo11g01879 | 303 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cmo11g01879 | 303 | SUPERFAMILY | Leucine zipper domain | 169 | 223 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo11g01879 | 303 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 287 | - | - | |
Cmo11g01879 | 303 | MobiDBLite | consensus disorder prediction | 107 | 170 | - | - | |
Cmo11g01879 | 303 | CDD | bZIP_plant_RF2 | 170 | 220 | IPR044759 | GO:0003700|GO:0006355 | |
Cmo11g01879 | 303 | Coils | Coil | 248 | 268 | - | - | |
Cmo11g01879 | 303 | MobiDBLite | consensus disorder prediction | 62 | 88 | - | - | |
Cmo11g01879 | 303 | Pfam | bZIP transcription factor | 169 | 213 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01879 | 303 | MobiDBLite | consensus disorder prediction | 143 | 160 | - | - | |
Cmo11g01879 | 303 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 167 | 219 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01879 | 303 | SMART | brlzneu | 165 | 229 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo11g01879 | 303 | MobiDBLite | consensus disorder prediction | 121 | 142 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01879 | Cmo20g00648 | CCT | |
Cmo11g01879 | Cmo20g00648 | ECH | |
Cmo11g01879 | Cmo19g00926 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01879 | Cmo-Chr11:13083836 | Cmo16g00423 | Cmo-Chr16:1976093 | 3.49E-24 | dispersed | |
Cmo18g00962 | Cmo-Chr18:10688228 | Cmo11g01879 | Cmo-Chr11:13083836 | 3.87E-21 | transposed | |
Cmo11g01879 | Cmo-Chr11:13083836 | Cmo19g00926 | Cmo-Chr19:8586158 | 6.04E-158 | wgd | |
Cmo11g01879 | Cmo-Chr11:13083836 | Cmo20g00648 | Cmo-Chr20:3173495 | 6.94E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10658 | PF07716 | bZIP_2 | 2.10E-09 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01879 | - | - | cmax:111486081 | 550.436 |