Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01880 | ATGGACCGTGGCTTGATCATGTTCGATCATAACAACGACAACAACAACGACAGCGATAGCAACAACAAGAAGATGTTTTTGCCTTACAATGATCATGTTCAAAGTTGTAGAGATAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTCGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAGGAGAAAGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTAGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCTATGGACTGTTCTTCCACTCTCTTCTGA | 867 | 46.6 | MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13095540 | 13098750 | + | CmoCh11G018800.1 | Cmo11g01880 | 392499 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01880 | 288 | CDD | homeodomain | 202 | 254 | IPR001356 | GO:0003677 | |
Cmo11g01880 | 288 | Pfam | KNOX1 domain | 37 | 73 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo11g01880 | 288 | Gene3D | - | 195 | 257 | - | - | |
Cmo11g01880 | 288 | Pfam | ELK domain | 170 | 191 | IPR005539 | GO:0003677 | |
Cmo11g01880 | 288 | SUPERFAMILY | Homeodomain-like | 192 | 267 | IPR009057 | - | |
Cmo11g01880 | 288 | Pfam | Homeobox KN domain | 210 | 249 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo11g01880 | 288 | ProSiteProfiles | ELK domain profile. | 170 | 190 | IPR005539 | GO:0003677 | |
Cmo11g01880 | 288 | SMART | KNOX1_2 | 34 | 78 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo11g01880 | 288 | SMART | HOX_1 | 192 | 257 | IPR001356 | GO:0003677 | |
Cmo11g01880 | 288 | Pfam | KNOX2 domain | 86 | 130 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo11g01880 | 288 | SMART | ELK_2 | 170 | 191 | IPR005539 | GO:0003677 | |
Cmo11g01880 | 288 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 13 | 279 | - | - | |
Cmo11g01880 | 288 | SMART | KNOX2_2 | 81 | 132 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo11g01880 | 288 | ProSitePatterns | 'Homeobox' domain signature. | 228 | 251 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo11g01880 | 288 | ProSiteProfiles | 'Homeobox' domain profile. | 190 | 253 | IPR001356 | GO:0003677 | |
Cmo11g01880 | 288 | PANTHER | HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 | 13 | 279 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00084 | Cmo11g01880 | CCT | |
Cmo11g01880 | Cmo20g00234 | CCT | |
Cmo02g00084 | Cmo11g01880 | ECH | |
Cmo11g01880 | Cmo20g00234 | ECH | |
Cmo11g01880 | Cmo19g00929 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00320 | Cmo-Chr9:1391789 | Cmo11g01880 | Cmo-Chr11:13095540 | 2.01E-81 | dispersed | |
Cmo11g01880 | Cmo-Chr11:13095540 | Cmo04g01834 | Cmo-Chr4:9211224 | 5.83E-73 | dispersed | |
Cmo11g01880 | Cmo-Chr11:13095540 | Cmo03g00580 | Cmo-Chr3:5622973 | 6.56E-123 | wgd | |
Cmo11g01880 | Cmo-Chr11:13095540 | Cmo07g00320 | Cmo-Chr7:1518538 | 3.76E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10659 | PF03791 | KNOX2 | 2.50E-22 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01880 | - | - | cpep:111792192 | 540.421 |