Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01880 ATGGACCGTGGCTTGATCATGTTCGATCATAACAACGACAACAACAACGACAGCGATAGCAACAACAAGAAGATGTTTTTGCCTTACAATGATCATGTTCAAAGTTGTAGAGATAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCGCCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTGTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGCTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTCGTCGATATGAACGAAAACTACATCGACCCACAAGCCGAGGAGAAAGAACTCAAAGGCCAACTTCTACGCAAATATAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTCAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTAGCGTTGGCCGAGTCGACGGGACTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGACATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCTATGGACTGTTCTTCCACTCTCTTCTGA 867 46.6 MDRGLIMFDHNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13095540 13098750 + CmoCh11G018800.1 Cmo11g01880 392499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01880 288 CDD homeodomain 202 254 IPR001356 GO:0003677
Cmo11g01880 288 Pfam KNOX1 domain 37 73 IPR005540 GO:0003677|GO:0005634
Cmo11g01880 288 Gene3D - 195 257 - -
Cmo11g01880 288 Pfam ELK domain 170 191 IPR005539 GO:0003677
Cmo11g01880 288 SUPERFAMILY Homeodomain-like 192 267 IPR009057 -
Cmo11g01880 288 Pfam Homeobox KN domain 210 249 IPR008422 GO:0003677|GO:0006355
Cmo11g01880 288 ProSiteProfiles ELK domain profile. 170 190 IPR005539 GO:0003677
Cmo11g01880 288 SMART KNOX1_2 34 78 IPR005540 GO:0003677|GO:0005634
Cmo11g01880 288 SMART HOX_1 192 257 IPR001356 GO:0003677
Cmo11g01880 288 Pfam KNOX2 domain 86 130 IPR005541 GO:0003677|GO:0005634
Cmo11g01880 288 SMART ELK_2 170 191 IPR005539 GO:0003677
Cmo11g01880 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 279 - -
Cmo11g01880 288 SMART KNOX2_2 81 132 IPR005541 GO:0003677|GO:0005634
Cmo11g01880 288 ProSitePatterns 'Homeobox' domain signature. 228 251 IPR017970 GO:0000981|GO:0006355
Cmo11g01880 288 ProSiteProfiles 'Homeobox' domain profile. 190 253 IPR001356 GO:0003677
Cmo11g01880 288 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 13 279 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00084 Cmo11g01880 CCT
Cmo11g01880 Cmo20g00234 CCT
Cmo02g00084 Cmo11g01880 ECH
Cmo11g01880 Cmo20g00234 ECH
Cmo11g01880 Cmo19g00929 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00320 Cmo-Chr9:1391789 Cmo11g01880 Cmo-Chr11:13095540 2.01E-81 dispersed
Cmo11g01880 Cmo-Chr11:13095540 Cmo04g01834 Cmo-Chr4:9211224 5.83E-73 dispersed
Cmo11g01880 Cmo-Chr11:13095540 Cmo03g00580 Cmo-Chr3:5622973 6.56E-123 wgd
Cmo11g01880 Cmo-Chr11:13095540 Cmo07g00320 Cmo-Chr7:1518538 3.76E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10659 PF03791 KNOX2 2.50E-22 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01880 - - cpep:111792192 540.421