Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01889 | ATGGAAGCCGCCGCCCCTTCTCCTCCTCCTCCTCCTCCCCCCACCGCTACCTTCCACTTTCCGGTCAACCTCAACTCCACCCTCCACGAACCTCCTCCCTCTCCTCCCCCCTCTCCTCCTCCCTCTCCCCCTCCCCCACCGCCCTTCTTCCACTCTCACCGCGCCCTCTTCGACGAAATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTATCTCCGCCGCTGACTCCAAACTCCGTGCCTCCGACAACCTCAGTCCCACCAAGCTCGAATTTCAAGTAAATACTGGGTTGAATCTGTTGACCACGAATTACAGTAGCGATCAATCCATGGTGGACGATGGAATTTCATCGAACCCACAAGACACAAAAACAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAGTGAACACAGAGAATCAACGGTTAAAAGACACGTTAAATCAAGTCACCAGCAATTACCAATCGCTGCAGATGCAGTTCACAACGCTAATTCAAACCCAGAAGGCAGCCGACGCCGGCGATTCAACTGACGAGAAGGCCGGCGACCAAGAAACGATCCGACACGGCGGTGGCGGAGCGAATAATGGTAATAAGCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCTACGAATGCGGACATCGATGAGCCATCGATGTCGTCGTCGGAAGGGAGGAGTGATCGGTCGCCGGGTACCACCGGAGAAGTGGCATCGTCAAAACGACATAGCCCAGATCAAGGTTCGAATTTGGGTTCAAACAAGGCTTCTAAATTCAGTTCTTCGTCCTCCAGTAAAGACGTGGATCAAACTGAAGCTACTATGAGAAAAGCTCGAGTCTCCGTTCGAGCTAGATCGGAAGCACCCATGATAACGGACGGATGTCAATGGCGAAAATACGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTACTATCGATGCACCATGGCCGCCGGTTGCCCCGTTCGGAAACAAGTACAAAGATGTGCAGAAGACAAGACAATTTTGATAACAACGTACGAAGGCAATCACAACCATCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCTAGAATGCTTCTATCAGGCTCCATGTCAAGTGCCGACGGTTTAATGAACCCAAATTTTCTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACAATCTCGGCCTCGGCCCCATTTCCGACGGTCACATTAGACCTAACACAAACCCCGAACCCTTTATTCCAACGACCCGCACCGGGTCACTTCCCGATCCCGTTCGCAGCCGGTCCGACTCAAAGCTTCCCACAAATTTTTGGACATGCCCTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCGAAGGATATAGAAGGGCCTACGCCTCCTCCTCCGTCGCAAAATCCATTGGCCGACACGTTGAGCGCGGCGAGTGCGGCGATCGCTTCCGACCCGAATTTCATTGCGGCGTTGGCTTCGGCGATGACGTCGTTGATCGGCGGATCGCATCATCAAAAGGAGAATGGAAATGGAAATGGGAATGGGAATAATAATAATGTTGATAATAACACAACAAGCAACTCCCAACAGTAA | 1629 | 51.44 | MEAAAPSPPPPPPPTATFHFPVNLNSTLHEPPPSPPPSPPPSPPPPPPFFHSHRALFDEMNFFAADDKSRVLISAADSKLRASDNLSPTKLEFQVNTGLNLLTTNYSSDQSMVDDGISSNPQDTKTKNERAVLQAELERVNTENQRLKDTLNQVTSNYQSLQMQFTTLIQTQKAADAGDSTDEKAGDQETIRHGGGGANNGNKLVPRQFMDLGLATNADIDEPSMSSSEGRSDRSPGTTGEVASSKRHSPDQGSNLGSNKASKFSSSSSSKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAPGHFPIPFAAGPTQSFPQIFGHALYNQSKFSGLQMSKDIEGPTPPPPSQNPLADTLSAASAAIASDPNFIAALASAMTSLIGGSHHQKENGNGNGNGNNNNVDNNTTSNSQQ | 542 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13133736 | 13136353 | + | CmoCh11G018890.1 | Cmo11g01889 | 392508 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01889 | 542 | MobiDBLite | consensus disorder prediction | 176 | 204 | - | - | |
Cmo11g01889 | 542 | SMART | WRKY_cls | 296 | 356 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01889 | 542 | SUPERFAMILY | WRKY DNA-binding domain | 289 | 357 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01889 | 542 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 52 | 538 | IPR044810 | GO:0003700 | |
Cmo11g01889 | 542 | MobiDBLite | consensus disorder prediction | 220 | 274 | - | - | |
Cmo11g01889 | 542 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Cmo11g01889 | 542 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cmo11g01889 | 542 | MobiDBLite | consensus disorder prediction | 219 | 292 | - | - | |
Cmo11g01889 | 542 | Pfam | WRKY DNA -binding domain | 298 | 355 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01889 | 542 | ProSiteProfiles | WRKY domain profile. | 291 | 357 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g01889 | 542 | Coils | Coil | 130 | 164 | - | - | |
Cmo11g01889 | 542 | MobiDBLite | consensus disorder prediction | 28 | 50 | - | - | |
Cmo11g01889 | 542 | MobiDBLite | consensus disorder prediction | 513 | 542 | - | - | |
Cmo11g01889 | 542 | PANTHER | OS05G0567200 PROTEIN | 52 | 538 | - | - | |
Cmo11g01889 | 542 | Gene3D | WRKY domain | 281 | 358 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01889 | Cmo19g00938 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00546 | Cmo-Chr4:2699744 | Cmo11g01889 | Cmo-Chr11:13133736 | 5.17E-47 | dispersed | |
Cmo10g00198 | Cmo-Chr10:885235 | Cmo11g01889 | Cmo-Chr11:13133736 | 2.35E-61 | dispersed | |
Cmo11g01889 | Cmo-Chr11:13133736 | Cmo13g00963 | Cmo-Chr13:8331688 | 7.43E-47 | dispersed | |
Cmo11g01889 | Cmo-Chr11:13133736 | Cmo19g00938 | Cmo-Chr19:8631530 | 0 | wgd | |
Cmo11g01889 | Cmo-Chr11:13133736 | Cmo03g00573 | Cmo-Chr3:5582475 | 2.43E-138 | wgd | |
Cmo11g01889 | Cmo-Chr11:13133736 | Cmo07g00311 | Cmo-Chr7:1500016 | 5.38E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10661 | PF03106 | WRKY | 2.50E-24 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01889 | - | - | cmos:111437115 | 927.161 |