Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01889 ATGGAAGCCGCCGCCCCTTCTCCTCCTCCTCCTCCTCCCCCCACCGCTACCTTCCACTTTCCGGTCAACCTCAACTCCACCCTCCACGAACCTCCTCCCTCTCCTCCCCCCTCTCCTCCTCCCTCTCCCCCTCCCCCACCGCCCTTCTTCCACTCTCACCGCGCCCTCTTCGACGAAATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTATCTCCGCCGCTGACTCCAAACTCCGTGCCTCCGACAACCTCAGTCCCACCAAGCTCGAATTTCAAGTAAATACTGGGTTGAATCTGTTGACCACGAATTACAGTAGCGATCAATCCATGGTGGACGATGGAATTTCATCGAACCCACAAGACACAAAAACAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAGTGAACACAGAGAATCAACGGTTAAAAGACACGTTAAATCAAGTCACCAGCAATTACCAATCGCTGCAGATGCAGTTCACAACGCTAATTCAAACCCAGAAGGCAGCCGACGCCGGCGATTCAACTGACGAGAAGGCCGGCGACCAAGAAACGATCCGACACGGCGGTGGCGGAGCGAATAATGGTAATAAGCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCTACGAATGCGGACATCGATGAGCCATCGATGTCGTCGTCGGAAGGGAGGAGTGATCGGTCGCCGGGTACCACCGGAGAAGTGGCATCGTCAAAACGACATAGCCCAGATCAAGGTTCGAATTTGGGTTCAAACAAGGCTTCTAAATTCAGTTCTTCGTCCTCCAGTAAAGACGTGGATCAAACTGAAGCTACTATGAGAAAAGCTCGAGTCTCCGTTCGAGCTAGATCGGAAGCACCCATGATAACGGACGGATGTCAATGGCGAAAATACGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTACTATCGATGCACCATGGCCGCCGGTTGCCCCGTTCGGAAACAAGTACAAAGATGTGCAGAAGACAAGACAATTTTGATAACAACGTACGAAGGCAATCACAACCATCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCTAGAATGCTTCTATCAGGCTCCATGTCAAGTGCCGACGGTTTAATGAACCCAAATTTTCTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACAATCTCGGCCTCGGCCCCATTTCCGACGGTCACATTAGACCTAACACAAACCCCGAACCCTTTATTCCAACGACCCGCACCGGGTCACTTCCCGATCCCGTTCGCAGCCGGTCCGACTCAAAGCTTCCCACAAATTTTTGGACATGCCCTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCGAAGGATATAGAAGGGCCTACGCCTCCTCCTCCGTCGCAAAATCCATTGGCCGACACGTTGAGCGCGGCGAGTGCGGCGATCGCTTCCGACCCGAATTTCATTGCGGCGTTGGCTTCGGCGATGACGTCGTTGATCGGCGGATCGCATCATCAAAAGGAGAATGGAAATGGAAATGGGAATGGGAATAATAATAATGTTGATAATAACACAACAAGCAACTCCCAACAGTAA 1629 51.44 MEAAAPSPPPPPPPTATFHFPVNLNSTLHEPPPSPPPSPPPSPPPPPPFFHSHRALFDEMNFFAADDKSRVLISAADSKLRASDNLSPTKLEFQVNTGLNLLTTNYSSDQSMVDDGISSNPQDTKTKNERAVLQAELERVNTENQRLKDTLNQVTSNYQSLQMQFTTLIQTQKAADAGDSTDEKAGDQETIRHGGGGANNGNKLVPRQFMDLGLATNADIDEPSMSSSEGRSDRSPGTTGEVASSKRHSPDQGSNLGSNKASKFSSSSSSKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAPGHFPIPFAAGPTQSFPQIFGHALYNQSKFSGLQMSKDIEGPTPPPPSQNPLADTLSAASAAIASDPNFIAALASAMTSLIGGSHHQKENGNGNGNGNNNNVDNNTTSNSQQ 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13133736 13136353 + CmoCh11G018890.1 Cmo11g01889 392508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01889 542 MobiDBLite consensus disorder prediction 176 204 - -
Cmo11g01889 542 SMART WRKY_cls 296 356 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01889 542 SUPERFAMILY WRKY DNA-binding domain 289 357 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g01889 542 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 52 538 IPR044810 GO:0003700
Cmo11g01889 542 MobiDBLite consensus disorder prediction 220 274 - -
Cmo11g01889 542 MobiDBLite consensus disorder prediction 1 50 - -
Cmo11g01889 542 MobiDBLite consensus disorder prediction 1 18 - -
Cmo11g01889 542 MobiDBLite consensus disorder prediction 219 292 - -
Cmo11g01889 542 Pfam WRKY DNA -binding domain 298 355 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01889 542 ProSiteProfiles WRKY domain profile. 291 357 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g01889 542 Coils Coil 130 164 - -
Cmo11g01889 542 MobiDBLite consensus disorder prediction 28 50 - -
Cmo11g01889 542 MobiDBLite consensus disorder prediction 513 542 - -
Cmo11g01889 542 PANTHER OS05G0567200 PROTEIN 52 538 - -
Cmo11g01889 542 Gene3D WRKY domain 281 358 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01889 Cmo19g00938 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00546 Cmo-Chr4:2699744 Cmo11g01889 Cmo-Chr11:13133736 5.17E-47 dispersed
Cmo10g00198 Cmo-Chr10:885235 Cmo11g01889 Cmo-Chr11:13133736 2.35E-61 dispersed
Cmo11g01889 Cmo-Chr11:13133736 Cmo13g00963 Cmo-Chr13:8331688 7.43E-47 dispersed
Cmo11g01889 Cmo-Chr11:13133736 Cmo19g00938 Cmo-Chr19:8631530 0 wgd
Cmo11g01889 Cmo-Chr11:13133736 Cmo03g00573 Cmo-Chr3:5582475 2.43E-138 wgd
Cmo11g01889 Cmo-Chr11:13133736 Cmo07g00311 Cmo-Chr7:1500016 5.38E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10661 PF03106 WRKY 2.50E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01889 - - cmos:111437115 927.161