Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01890 ATGACCTGGACCCGACTCGCCGCCGTCGGCCAGGGCTCCTCCGCCACCGTCTACCTTGCCTCCGCCGCCCCTGCCGGAGACGTTTTTGCTGTCAAGTCCGCCGAGCTTCCCGAATCGGAGTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCTTTGTCCCACCCTTCCATTGTGAGCTACAGGGGATTCGATGTAACGAGAGAGAATGGGAAGCTGATGTATAATCTCTTCATGGAGTACGCCACCGGCGGTACACTCGCCGACGAAATTCTCCGGTGCGGCGGCTGGATTAAAGAGACGGCGGCGGGATTCTACACGCGTGAAATTGTGAAAGGATTGGAGTATTTGCACAAAAGGGGTTTGGTGCATTGTGATATTAAAGCTAAGAATATTTTAATCGGGGAAGATGGTTTGAAGATCGCGGATTTCGGATGCTCGAAATGGGTTAATGAACCGGCGGCTATCGGTGGAACGCCGATGTTCATGGCGCCGGAAGTAGCACGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGTCACTTGGGTGTACTTTAATCGAAATGGTCAACGGTGCTCCACCGTGGCCAACCGACGGCGACCCAGTTTCAGTACTGTACCGGATAGGATATTCCGGCGAGTCGCCGGAAATTCCAAGCTTTCTATCGGAGAAAGCGAAGGATTTTCTGGGAAAATGCTTGAGAAGAAACCCAACAGAACGCTGGAGCACGAGCCAGCTTCTTGAACATCCATTCTTAGAGGACACGAATTCTGAGTGGTTCGAGGAATCCAAGGAATTAGATTCAAATTCTCCGACAAGTATCTTGGATCAAGGCGTTTGGAATTCGCAAAGTGAGCTGAAAACAGAGGAATGGGACGACGACAGAATCAGACGGCTGTCGATGTTCCGATGGGAAATCAAGTGGGAATCGGACGGTGAGAATTGGATGACGATCAGAGGAAGGTGCGTGGACGGTGAAGATGAGGCGGAATCCATTAGTGGGCAAACCAAAAGCTTGGAATTGTTTGATAGAACAGTTAGGTTTAGAGTAAGTGATGATATTTTGAGGAATACCCACATTAACATATGA 1089 49.77 MTWTRLAAVGQGSSATVYLASAAPAGDVFAVKSAELPESEFLKTEQRILSSLSHPSIVSYRGFDVTRENGKLMYNLFMEYATGGTLADEILRCGGWIKETAAGFYTREIVKGLEYLHKRGLVHCDIKAKNILIGEDGLKIADFGCSKWVNEPAAIGGTPMFMAPEVARGEKQGISSDIWSLGCTLIEMVNGAPPWPTDGDPVSVLYRIGYSGESPEIPSFLSEKAKDFLGKCLRRNPTERWSTSQLLEHPFLEDTNSEWFEESKELDSNSPTSILDQGVWNSQSELKTEEWDDDRIRRLSMFRWEIKWESDGENWMTIRGRCVDGEDEAESISGQTKSLELFDRTVRFRVSDDILRNTHINI 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13141047 13142177 + CmoCh11G018900.1 Cmo11g01890 392509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01890 362 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01890 362 PANTHER MAP KINASE KINASE KINASE 1 336 - -
Cmo11g01890 362 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Cmo11g01890 362 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01890 362 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 336 - -
Cmo11g01890 362 CDD STKc_MAPKKK 3 252 - -
Cmo11g01890 362 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Cmo11g01890 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Cmo11g01890 362 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cmo11g01890 362 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00180 Cmo11g01890 CCT
Cmo02g00180 Cmo11g01890 ECH
Cmo11g01890 Cmo19g00939 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01167 Cmo-Chr1:9545207 Cmo11g01890 Cmo-Chr11:13141047 2.57E-104 dispersed
Cmo09g00962 Cmo-Chr9:5072083 Cmo11g01890 Cmo-Chr11:13141047 3.41E-103 dispersed
Cmo11g01890 Cmo-Chr11:13141047 Cmo20g01005 Cmo-Chr20:6127972 2.40E-56 dispersed
Cmo11g01890 Cmo-Chr11:13141047 Cmo19g00939 Cmo-Chr19:8635652 0 wgd
Cmo11g01890 Cmo-Chr11:13141047 Cmo02g00180 Cmo-Chr2:852639 1.54E-130 wgd
Cmo11g01890 Cmo-Chr11:13141047 Cmo03g00571 Cmo-Chr3:5572843 7.96E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74698 PF00069 Pkinase 1.40E-56 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01890 K20716 - csv:101205351 500.745