Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01904 ATGGGAATATTTGGTGCTCTACCGCTGCTGCATACTTTGATATGGCTGTTTCTTAGTGGTTCGATCTGGTGCCAAAAGGCAGTTGTGGTAAATATTGGTGCGGTTTTTACTTTCAATTCGGTTATTGGTAGAGCAGCAAAGCCGGCGATGGAAGCAGCAATCGCCGACATAAATGCTGACCCCAACATCTTGAGTGGGACAAAGGTGAAGCTCCTGATGGAGGACTCTAACTGCAGCGACTTCTTGGGCTCTGTTGGGGCTTTGCATGTACTTGAGAAAGAGATCGTTGCCATCATTGGCCCACAATCCTCGGTGGTGGCTCATGTGATTTCTGAGCTTGTTAATGGTCTACAAATTCCTCAAGTATCATATGGTGCCACTGATCCAACATTATCGACTCTCCAACTCCCTTTCTTCCTCCGAACCACTTTAAGTGACTCTTACCAAATGGCTGCCATGGCTGACTTGATTGATTACTATGGGTGGAAAGAGGTCATTGTTATATTTTTGGATGATGATTATGGGAGAAATGGGATATCTTCTTTGGGTGATGAACTTCAGAAGAAAATGTGTCGTATTGCTCATGGATTTGGCTTGCCTTCTCTGGCTAATCTTACTAAGATCACGGAGATACTTAACCAATCTAAATTGCTCGGTCCTCGTGTTTATGTCGTTCACGTCGGCCCCGATCCTCAATTAAGAATCTTCACCATCGCCCATAAACTTGGTATGCTTTCCAGCAATTACGTTTGGTTTGCAACTGATTGGCTTGCCACAACTCTAGATTCTTTTTCACCAACAGATCTTGCTTCACTTGATATACTTAATGGGGTAGTGGGGCTACGCCCTCATACTCAAGAGTCTAAAGGAAAGAAGGATTTGTGGAATCGTTTGAGCAAAATGCAGCCCAAAGGTTTGGCCAATTCTGTGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGGTTGTTGCCAGGGCAGTGGATAAGTTTCTCAAAGAAAATGGTAATATAACCTTTTCATCTACAGGTAAAGTCTTTGGCACTAGTAAAAGTGGAATTCAACTAGGAAGGCTTAAAGTGTTTAATGGAGGAAGTGATCTTCTTAGGATTATTATGCAAACAAATTACAGTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGACAGAAATATCATCAATGGTAGCTATGATGTGATTAATATTGACCAAAAGGAAATTCGTACGGTGGGTTATTGGTTTAACTACTCAGGATTCTCGATTTCACCACCAGAAGCCTTGACATTGAAACAAAAAGATTCCCCCTTAGATCAGAAACTCGACATTGTAGTTTGGCCTGGTGGAAACTCAAAAATACCAAACGGTTGGGTGATAGCAGACGCTGGAAAGCCCCTAAGAATTGCATATCCAAGAAGAGCAAGCTTTGTTGAGTTTGTTACTCAAGTGAACAACACCAATATAGTTCAAGGATACGTAATTGATATTTTCAAAGCAGCACTCAAGCTTATTCCATATGAAGTTCCTTACAAATTTGTGCCGTTTGGGGATGGTCTTGTCAATCCTAGTTACGATGAACTCGTTCAATCGGTTGCAGATAGTGTGTTTGATGCAGCTGTTGGGGACATTGCTATTGTTACCAACCGTACAAAGGTTGTTGATTTTTCTCAACCCTATATCACTACCGGGCTTATCATAGTTGCCCCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGCAGAGATGTGGTGTGTAACAGGATTTTCTTTTGTGATTATTGGGATTGTTATTTGGATGCTTGAGCACCGAATCAACGACCATTTTCGAGGTCCTCCAAAGAGGCAGATTATCACTATGTGTCTGTTCAGCTTTTCAACTCTGTTCAAGGCTAATCAAGAAGCAACCATTAGCCCACTTTCACGAATGGTGATGTTGGTATGGCTGTTCTTATTGTTGGTAATAACGTCAAGCTACACAGCAAGTTTGACATCAATACTCACAATTCAGAAACTTTGGTCGCCAATACGTGGAATTGATGACTTGGTTGCAAGTAACGTGCCAATAGGATATCAGGTAGGATCCTTTGCTTATGACTATTTGACACAGAGCCTTTTCATACCACGCTCCAGACTAGTGGAGCTTCACGACCCTGATGATTACGAGAAAGCGCTGCGGCTTGGTCCAAAAGGAGGCGGTGTGGCAGCTATCATTGATGAACTGCCGTATTTGGAGTTATTTCTGTCTAAGACCAAAGAGTTTGGAATGATCGGACAAACTTTTACTAGAAGCGGATGGGGATTTGCTTTTCAGCGAAGATCTCGACTCGCAGTTGATATGTCAACTGCAATTTTAAGACTCTCTGAGAATGGAAAGCTTCAAGAGATACACGACACCTGGTTCTGTAAGCTGGGTTGTCCCGGGCAGCGGGGAGGAGAAGCGCAGCCAGACCAACTTCACCTAATCAGTTTCTGGGGTTTGTATTTACTTTGTGGAATCATTTCCTCTACTGCACTTTTCATGTTTCTTCTAAGAATAATTGGTCAGTATATCCGTTATCAACGACAACACCGTCATTCAGAGGTGGTTACACCGACCCCCATTCCGTCCAATACTGGCTGTACTCAGACCATTCAAAGTTTTATGCGGTTTATTGACGAGAAGGATGAAGCCATCAAAAACTTCTTTCGAGCAGCACATTTACGTGGTGCTCAAAGTGGGGAGCAACTCCAGAGACATTCCGGAGGGACAAAGGAGAAGGCTGATTTAGAGGTACAACTGGGGACCTCGAGTACGAATTTAGGATAA 2823 42.61 MGIFGALPLLHTLIWLFLSGSIWCQKAVVVNIGAVFTFNSVIGRAAKPAMEAAIADINADPNILSGTKVKLLMEDSNCSDFLGSVGALHVLEKEIVAIIGPQSSVVAHVISELVNGLQIPQVSYGATDPTLSTLQLPFFLRTTLSDSYQMAAMADLIDYYGWKEVIVIFLDDDYGRNGISSLGDELQKKMCRIAHGFGLPSLANLTKITEILNQSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLSSNYVWFATDWLATTLDSFSPTDLASLDILNGVVGLRPHTQESKGKKDLWNRLSKMQPKGLANSVLNVYGLYAYDSVWVVARAVDKFLKENGNITFSSTGKVFGTSKSGIQLGRLKVFNGGSDLLRIIMQTNYSGLSGRIQFGEDRNIINGSYDVINIDQKEIRTVGYWFNYSGFSISPPEALTLKQKDSPLDQKLDIVVWPGGNSKIPNGWVIADAGKPLRIAYPRRASFVEFVTQVNNTNIVQGYVIDIFKAALKLIPYEVPYKFVPFGDGLVNPSYDELVQSVADSVFDAAVGDIAIVTNRTKVVDFSQPYITTGLIIVAPVKDSKSSAWVFLKPFTAEMWCVTGFSFVIIGIVIWMLEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATISPLSRMVMLVWLFLLLVITSSYTASLTSILTIQKLWSPIRGIDDLVASNVPIGYQVGSFAYDYLTQSLFIPRSRLVELHDPDDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKEFGMIGQTFTRSGWGFAFQRRSRLAVDMSTAILRLSENGKLQEIHDTWFCKLGCPGQRGGEAQPDQLHLISFWGLYLLCGIISSTALFMFLLRIIGQYIRYQRQHRHSEVVTPTPIPSNTGCTQTIQSFMRFIDEKDEAIKNFFRAAHLRGAQSGEQLQRHSGGTKEKADLEVQLGTSSTNLG 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13228629 13233875 - CmoCh11G019040.1 Cmo11g01904 392523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01904 940 Gene3D - 145 420 - -
Cmo11g01904 940 PIRSF IGluLR_plant 3 934 IPR017103 -
Cmo11g01904 940 Gene3D - 577 709 - -
Cmo11g01904 940 Gene3D - 467 576 - -
Cmo11g01904 940 PANTHER GLUTAMATE RECEPTOR 3.7 13 902 - -
Cmo11g01904 940 Gene3D - 754 813 - -
Cmo11g01904 940 Pfam Receptor family ligand binding region 47 404 IPR001828 -
Cmo11g01904 940 SUPERFAMILY Periplasmic binding protein-like I 29 457 IPR028082 -
Cmo11g01904 940 CDD GluR_Plant 464 806 - -
Cmo11g01904 940 Gene3D - 49 395 - -
Cmo11g01904 940 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Cmo11g01904 940 Pfam Bacterial extracellular solute-binding proteins, family 3 483 806 IPR001638 -
Cmo11g01904 940 MobiDBLite consensus disorder prediction 911 940 - -
Cmo11g01904 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Cmo11g01904 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Cmo11g01904 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Cmo11g01904 940 CDD PBP1_GABAb_receptor_plant 31 424 IPR044440 -
Cmo11g01904 940 Pfam Ligand-gated ion channel 807 838 IPR001320 GO:0015276|GO:0016020
Cmo11g01904 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 902 - -
Cmo11g01904 940 SUPERFAMILY Periplasmic binding protein-like II 443 806 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00171 Cmo11g01904 CCT
Cmo11g01904 Cmo20g00619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01904 Cmo-Chr11:13228629 Cmo20g00620 Cmo-Chr20:3045107 0 dispersed
Cmo11g01904 Cmo-Chr11:13228629 Cmo02g00170 Cmo-Chr2:810572 0 wgd
Cmo11g01904 Cmo-Chr11:13228629 Cmo20g00619 Cmo-Chr20:3031474 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01904 K05387 - csv:101203158 1492.25