Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01907 ATGCCAGCCGGAATGATGATTCCAGCCAGAAATGCGCCGTCGATGATCGGAAGAAATGGGAATGTCGGTGTTTTTGGCTCTCCGGCGAGCCTTGTTCTTGGTCAGGCAAATATGATGGAAGGGGCGCAGCTACATGCATTAGACATGCCACAAAGCGGTTTGCCAGACAGCGATTATGGGGTGATGAAAGAAGCAGAGGACTTCGACAGTGCCACTAAATCAAGCAGCGAGAACCACGAGGTTGGCTCTGGTGACGACCAAGACCACCGCCAACGCTCCAAGAAGAAGCGTTACCACCGCCACACTCAGCACCAGATCCAACAAATGGAAGCGAAGGAGCTAAGTAAGGAGCTGGGTTTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACTCATCACGAGCGACATGAGAACACTCACCTCCGAACACAAAACGAAAAGCTTAGAGCCGATAATATGAGGTATCGAGAAGTGCTCAGTAATGCGACGTGCCCCAATTGTGGAGGCCCGACCGCCATCGGAGAAATGTCGTTTGATGAACATCATCTCAGGCTCGAAAATGCCCGCTTAAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAGTACGTAGGAAAGCCAGTTTCAAGCTTCCCTCTTCTTTCCCCATCAATTCCCACACATCCTCTAGAGCTCGGAATGGGCAGCTATGGAGCCGACATGTTCGGGGCGGCCGACCTTCTAAGGACGATAACCACGCCGTCGGAGGCCGACAAGCCGATGATCATCGAGCTGGCGGTTGCAGCCATGGAGGAACTAATCCGAATGGCTCAAATGGGCGAGCCCTTGTGGATGACAGCCCTTGATGGCTCAACCACACTGCTTAACCCAGATGAATATGTCCGAACCTTCCCTAGAGGAATCGGACCCAAACCCGCCGGGTTTAGCACCGAAGCGTCTCGAGCCACCGCTGTCGTCGTCATGAACCATATCAGCCTCGTGGAGATGCTCATGGACGTGAATCAGTGGTCGGCCGTATTCACTGGGATTGTCTCGAGGGCTACGACATTGGAGATTCTGTCCACCGGCGTTGCCGGTAACTACGACGGTGCATTACAAGTGATGGCGTCGGAATTGCAAGTGCCATCGCCGCTTGTTCCGACTCGGGAGAGCTACTTTGTGAGGTACTGTAAGCAACATGGCGAGGGAACATGGGCTGTGGTGGACGTGTCGTTGGATAATTTACGCCCTGCTCCTGCGCTTCGATGTAGAAGAAGGCCTTCGGGATGTTTGATCCAAGAAATGCCTCAAGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGATGGATGATCGAGGGATTCATAGTTTATACAATCAACTTGTTAGATCTGGCCACGCCTTCGGTGCAAAGCGTTGGATCGCCACGTTGGATCGTCAGTGTGAACGTCTTGCTAGTGCCATGACGATGAGTATTCCGAACGGTGATGCCGGTGTGATAATGAATCAAGAAGGAAGAAAGAGCATGCTGAAGCTAGCAGAGAGAATGGTGATGAGCTTTTGCGGCGGAGTGAGCGCGTCTACCGCGCACACGTGGACAACACTGTCTGGAACGGGAGCCGATGATGTCAGAGTCATGACACGTAAGAGCATAGACGATCCCGGCAGACCACCTGGCATTGTCCTCAGCGCCGCCACTTCCTTCTGGCTCCCTGTTCCTCCTAAGAGAGTCTTCGACTTTCTCAGAGATGAAAATTCTCGTAACGAGTGGGATATTCTATCGAACGGTGGAGTTGTACAAGAAATGGCCCACATTGCCAATGGTCGTGACACGGGCAACTCGGTCTCATTGCTACGAGTAAATAGTCCAAATTCAAGTCAAAGCAACATGTTGATATTACAAGAGAACATCACGGATCAAACCGCCGCGTTTGTGATCTACGCTCCGGTAGACATTGTGGCCATCAACGTGGTACTAAACGGTGGCGATCCCGATTACGTCGCCCTTCTCCCCTCTGGATTTGCCATTCTTCCCGACGGAACCGCCGCTTCCAACGACGGCGCTAACAACATCATGGAACATGGCTCGGGCGGGTCGCTGTTAACCGTTGCATTTCAGATCTTGGTCGACTCGATTCCGACGGCTAAACTATCACTTGGGTCGGTAGCAACGGTTAACAACCTGATTGCTTGTACTGTGGAGAGGATTAGAGCCTCTCTTTCGTGTGAGAATCCATGA 2244 51.78 MPAGMMIPARNAPSMIGRNGNVGVFGSPASLVLGQANMMEGAQLHALDMPQSGLPDSDYGVMKEAEDFDSATKSSSENHEVGSGDDQDHRQRSKKKRYHRHTQHQIQQMEAKELSKELGLEPLQVKFWFQNKRTQMKTHHERHENTHLRTQNEKLRADNMRYREVLSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSSFPLLSPSIPTHPLELGMGSYGADMFGAADLLRTITTPSEADKPMIIELAVAAMEELIRMAQMGEPLWMTALDGSTTLLNPDEYVRTFPRGIGPKPAGFSTEASRATAVVVMNHISLVEMLMDVNQWSAVFTGIVSRATTLEILSTGVAGNYDGALQVMASELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPQGYSKVTWVEHVEMDDRGIHSLYNQLVRSGHAFGAKRWIATLDRQCERLASAMTMSIPNGDAGVIMNQEGRKSMLKLAERMVMSFCGGVSASTAHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSPNSSQSNMLILQENITDQTAAFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGTAASNDGANNIMEHGSGGSLLTVAFQILVDSIPTAKLSLGSVATVNNLIACTVERIRASLSCENP 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13249775 13254169 + CmoCh11G019070.1 Cmo11g01907 392526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01907 747 Pfam Homeodomain 102 137 IPR001356 GO:0003677
Cmo11g01907 747 SUPERFAMILY Homeodomain-like 83 138 IPR009057 -
Cmo11g01907 747 Gene3D - 95 138 - -
Cmo11g01907 747 Gene3D - 303 483 IPR023393 -
Cmo11g01907 747 MobiDBLite consensus disorder prediction 66 111 - -
Cmo11g01907 747 CDD START_ArGLABRA2_like 260 484 - -
Cmo11g01907 747 MobiDBLite consensus disorder prediction 66 92 - -
Cmo11g01907 747 SUPERFAMILY Bet v1-like 505 739 - -
Cmo11g01907 747 ProSiteProfiles START domain profile. 256 488 IPR002913 GO:0008289
Cmo11g01907 747 CDD homeodomain 95 140 IPR001356 GO:0003677
Cmo11g01907 747 SMART HOX_1 93 143 IPR001356 GO:0003677
Cmo11g01907 747 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 60 744 - -
Cmo11g01907 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 744 IPR042160 -
Cmo11g01907 747 SMART START_1 265 485 IPR002913 GO:0008289
Cmo11g01907 747 ProSiteProfiles 'Homeobox' domain profile. 95 139 IPR001356 GO:0003677
Cmo11g01907 747 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Cmo11g01907 747 SUPERFAMILY Bet v1-like 258 487 - -
Cmo11g01907 747 Pfam START domain 266 485 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01907 Cmo20g00616 CCT
Cmo02g00167 Cmo11g01907 CCT
Cmo02g00167 Cmo11g01907 ECH
Cmo11g01907 Cmo20g00616 ECH
Cmo11g01907 Cmo19g00954 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01907 Cmo-Chr11:13249775 Cmo17g00020 Cmo-Chr17:89213 0 dispersed
Cmo11g01907 Cmo-Chr11:13249775 Cmo13g00750 Cmo-Chr13:7339496 0 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo19g00954 Cmo-Chr19:8710347 0 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo02g00167 Cmo-Chr2:799348 0 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo20g00616 Cmo-Chr20:3019339 0 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo03g00550 Cmo-Chr3:5496170 0 wgd
Cmo11g01907 Cmo-Chr11:13249775 Cmo07g00291 Cmo-Chr7:1422577 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10663 PF01852 START 8.30E-56 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01907 K09338 - csv:101219415 1272.3