Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g01909 | ATGTCTGAATTCAACGGGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGTCAAAAGAGTATGTTCATGTGCGCATTCAGCAACGCAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAA | 639 | 43.51 | MSEFNGQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13260102 | 13266288 | - | CmoCh11G019090.1 | Cmo11g01909 | 392528 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g01909 | 212 | SUPERFAMILY | eIF1-like | 112 | 212 | IPR036877 | GO:0003743|GO:0006413 | |
Cmo11g01909 | 212 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 1 | 111 | - | - | |
Cmo11g01909 | 212 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo11g01909 | 212 | CDD | eIF1_SUI1 | 29 | 111 | IPR005874 | GO:0003743 | |
Cmo11g01909 | 212 | Pfam | Translation initiation factor SUI1 | 127 | 201 | IPR001950 | GO:0003743|GO:0006413 | |
Cmo11g01909 | 212 | Pfam | Translation initiation factor SUI1 | 28 | 102 | IPR001950 | GO:0003743|GO:0006413 | |
Cmo11g01909 | 212 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 1 | 111 | - | - | |
Cmo11g01909 | 212 | Gene3D | - | 3 | 111 | - | - | |
Cmo11g01909 | 212 | Gene3D | - | 112 | 212 | - | - | |
Cmo11g01909 | 212 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 31 | 101 | IPR001950 | GO:0003743|GO:0006413 | |
Cmo11g01909 | 212 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 111 | 212 | - | - | |
Cmo11g01909 | 212 | SUPERFAMILY | eIF1-like | 7 | 112 | IPR036877 | GO:0003743|GO:0006413 | |
Cmo11g01909 | 212 | CDD | eIF1_SUI1 | 128 | 211 | IPR005874 | GO:0003743 | |
Cmo11g01909 | 212 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 111 | 212 | - | - | |
Cmo11g01909 | 212 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 130 | 200 | IPR001950 | GO:0003743|GO:0006413 | |
Cmo11g01909 | 212 | TIGRFAM | SUI1_MOF2: translation initiation factor SUI1 | 111 | 212 | IPR005874 | GO:0003743 | |
Cmo11g01909 | 212 | TIGRFAM | SUI1_MOF2: translation initiation factor SUI1 | 8 | 111 | IPR005874 | GO:0003743 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g01909 | Cmo19g00956 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01909 | Cmo-Chr11:13260102 | Cmo19g00956 | Cmo-Chr19:8721835 | 1.17E-69 | dispersed | |
Cmo11g01909 | Cmo-Chr11:13260102 | Cmo19g00955 | Cmo-Chr19:8717832 | 6.30E-69 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g01909 | K03113 | - | csv:101219651 | 219.935 |