Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01909 ATGTCTGAATTCAACGGGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGTCAAAAGAGTATGTTCATGTGCGCATTCAGCAACGCAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAA 639 43.51 MSEFNGQIPSAFDPFADANAEDSGAGSKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13260102 13266288 - CmoCh11G019090.1 Cmo11g01909 392528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01909 212 SUPERFAMILY eIF1-like 112 212 IPR036877 GO:0003743|GO:0006413
Cmo11g01909 212 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 111 - -
Cmo11g01909 212 MobiDBLite consensus disorder prediction 1 20 - -
Cmo11g01909 212 CDD eIF1_SUI1 29 111 IPR005874 GO:0003743
Cmo11g01909 212 Pfam Translation initiation factor SUI1 127 201 IPR001950 GO:0003743|GO:0006413
Cmo11g01909 212 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Cmo11g01909 212 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 111 - -
Cmo11g01909 212 Gene3D - 3 111 - -
Cmo11g01909 212 Gene3D - 112 212 - -
Cmo11g01909 212 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Cmo11g01909 212 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 111 212 - -
Cmo11g01909 212 SUPERFAMILY eIF1-like 7 112 IPR036877 GO:0003743|GO:0006413
Cmo11g01909 212 CDD eIF1_SUI1 128 211 IPR005874 GO:0003743
Cmo11g01909 212 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 111 212 - -
Cmo11g01909 212 ProSiteProfiles Translation initiation factor SUI1 family profile. 130 200 IPR001950 GO:0003743|GO:0006413
Cmo11g01909 212 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 111 212 IPR005874 GO:0003743
Cmo11g01909 212 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 8 111 IPR005874 GO:0003743
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01909 Cmo19g00956 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01909 Cmo-Chr11:13260102 Cmo19g00956 Cmo-Chr19:8721835 1.17E-69 dispersed
Cmo11g01909 Cmo-Chr11:13260102 Cmo19g00955 Cmo-Chr19:8717832 6.30E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01909 K03113 - csv:101219651 219.935