Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01937 ATGGGTTGGAGATCTTTGAGGAGTGCCAATTTGAGGATCTTGGCACAGGTTTTAGTCGGATTCGTGATCTGTGCAGCACAAGTTCTTCTCGGAATTACGAATCCAGGCGATTTTGCTGCTATTAGTAGCTTTCATACTGCGCTGGGGCTCCCCAATCTTCCTGGATGGGGCATTGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTTTGTAATGATTCAAATATCATTAAAATAGTTGTTAATGCTGCTAATTTGGGAGGTGAACTCGGTGATAGCTTGGGACTGTTTTCTTCTATCCAAACAATGTTTCTTTCAGCTAACGAGTTCACTGGAAGCATTCCGAGTTCATTATCATCTTTGATTCAACTGTCGTTGAACGACAACAAATTAAGTGGAGAAATACCAGATTCCTTTCAAGCCATTACTCAATTGGTCAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGCAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAATAATCAACTATCAGGGACCCTTGATGTTCTACAAGATCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACGCTTCCTCCTTCTGTATCTCCATCACCACCGTCACCGTCAAAGCCAGCACCACCACCAGCACCGCCTGTTCCTGAAGCACGACCATCTTCTCAACAAAAACCAAAGAATCAGGCTGATGGACCATCAGCGCCTGAGGAATTGAGCACTGGAAGAAATAAGAAAAACACTAAAAGGGTTGCTTTGATAACACTTGCAGCGATAGGTGCTTATAGGGCTGAGAGAGAGAATGCTGGCAATGACGGATCCATGCGCCCTCCAGTTGATCAGATACCTAAAGTTCCGATCGAGGCAGTAGTAAGGCCGAAGCAGGAAACTCAAATAGAAGCTCAGAAGGTCCCAAAAGCTCATGAAGAGAGAGAGACAAACATGCCAAGAATGAGTGCTATACCGAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCGCCCCCTCCCCCACCACCTCCCCCTCCACCACCACCACCTCCTATCGAAGAGGTCACTGCTGTGCCCAGTGTTCCAGCCGAAGTTCTTCCCTTGAAGCCTCCCACCAAACATAGAACTACCTCAACTTTTGCAAAATCTTTCACCATTGCGTCCCTACAGCAGTATACAAACAGCTTTTCACCGGAGAATCTTCTTGGAGAAGGTATGCTGGGGACTGTTTATAGGGCCCAGCTCCCCAGTGGGAAGCTACTGGCCGTCAAGAAACTGGATAAAAGAGCATTCAATCAACAAAAAGACGACGAGTTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGCGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCGTTGCACTCAGATGAAGAGTTTAGGAAGAACCTTTCTTGGAATGCCCGCATTCGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTCGATGATGAGTTTTCAGTCCGTGTTTCGGATTGCGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTGACAGCATATGGTTATGGGGCGCCAGAATTTGAATCGGGAGTTTATACACTCGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTCACGGGACGGATGTCTTACGACAGAACAAGGACCCGAGGTGAGCAGTTCTTAGTCAGATGGGCGATTCCACAGCTTCATGACATAGAGGCATTGACGAGCATGGTCGATCCTTCACTCAATGGTCGATATCCTGCCAAATCCTTGTCGTACTTCGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCGATGTCGACGGTTGTTCAGGACTTGCTGAGCATGATAAGGAGAGAACCAAATGGCAGTGGTTCAAGTGAAGACGGAAATGAAAATGTGATTATTGTGAGATTTTGTGGCGTCGGAACTGCTCTGATTTGTTTTCTGGGAATGGGATTCAGGAGAACTCAATGTGACCGAGTTAGTTTTGTTGTCTTTCTTAGTTTATTGAAAACCATGAATTCTGGAGCTGGAGGTGTTCAACCCGCACCCTCCAGGCTCTCACCTCTTCCCCATGAAACTTACGATCGTGGTGCAACGATTGACATTCCTCTCGATACTGCAAAGGATTTGAAAGCTAAGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAATTAAAGAAGAGGGAACAGGAATTAAAACGGAGGGAAGATGCTATTGCAAGAGCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCATTTTTTCCCCTTATCCATAATGATATTGCAAATGAAATACCGATCCATCTACAGAACGTCCAGTATGTTGCCTTCACAACATTGTTGGGTTTGGTTGTGTGCCTTTCGTGGAACATTATAGCAGTTACTACTGCTTGGATCAATGGTGAAGGTCCAACAATATGGTTTCTTGCTATTATCTACCTCATATCAGGTGTACCTGGAGCATATGTCGGGTGGTATCGTCCTCTCTATCGTGCTACAAGGACTGATAGTGCTCTGAAGTTCGGGTGGTTTTTCCTAGTTTACTCGATTCATATTAGCTTCTGCGTCTTTTCTGCAGTTGCTCCTCCCATTATATTTAAGGGGAAATCTCTTACAGGGATCTTACCTGCTATAGACTTGTTGAGTTCTAATGCTTTGGTTGGGCAAGTATACATGTACTTCCGAGGGAGCGGTATGGCTGCAGAAATGAAACATGAAGCCGCCATGGGAACCCTGAGGGCAGCTTTTTGA 3051 45.43 MGWRSLRSANLRILAQVLVGFVICAAQVLLGITNPGDFAAISSFHTALGLPNLPGWGIGQDPCGDAWQGVVCNDSNIIKIVVNAANLGGELGDSLGLFSSIQTMFLSANEFTGSIPSSLSSLIQLSLNDNKLSGEIPDSFQAITQLVNLDLSNNNLSGPLPPSASNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKLLSIPNFRKDGNPFNSSVSPTLPPSVSPSPPSPSKPAPPPAPPVPEARPSSQQKPKNQADGPSAPEELSTGRNKKNTKRVALITLAAIGAYRAERENAGNDGSMRPPVDQIPKVPIEAVVRPKQETQIEAQKVPKAHEERETNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPIEEVTAVPSVPAEVLPLKPPTKHRTTSTFAKSFTIASLQQYTNSFSPENLLGEGMLGTVYRAQLPSGKLLAVKKLDKRAFNQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKNLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDEFSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLLSMIRREPNGSGSSEDGNENVIIVRFCGVGTALICFLGMGFRRTQCDRVSFVVFLSLLKTMNSGAGGVQPAPSRLSPLPHETYDRGATIDIPLDTAKDLKAKEKELQAKEAELKKREQELKRREDAIARAGIVIEEKNWPPFFPLIHNDIANEIPIHLQNVQYVAFTTLLGLVVCLSWNIIAVTTAWINGEGPTIWFLAIIYLISGVPGAYVGWYRPLYRATRTDSALKFGWFFLVYSIHISFCVFSAVAPPIIFKGKSLTGILPAIDLLSSNALVGQVYMYFRGSGMAAEMKHEAAMGTLRAAF 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13388276 13401708 - CmoCh11G019370.1 Cmo11g01937 392556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01937 1016 SUPERFAMILY Protein kinase-like (PK-like) 414 711 IPR011009 -
Cmo11g01937 1016 PANTHER OS01G0253100 PROTEIN 102 297 IPR045271 GO:0004714|GO:0006468
Cmo11g01937 1016 PANTHER OS01G0253100 PROTEIN 307 726 IPR045271 GO:0004714|GO:0006468
Cmo11g01937 1016 PANTHER OS01G0253100 PROTEIN 22 139 IPR045271 GO:0004714|GO:0006468
Cmo11g01937 1016 Pfam SCAMP family 847 992 IPR007273 GO:0015031|GO:0016021
Cmo11g01937 1016 SUPERFAMILY L domain-like 51 215 - -
Cmo11g01937 1016 Coils Coil 807 837 - -
Cmo11g01937 1016 ProSiteProfiles Protein kinase domain profile. 437 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01937 1016 MobiDBLite consensus disorder prediction 222 285 - -
Cmo11g01937 1016 Gene3D Ribonuclease Inhibitor 37 236 IPR032675 -
Cmo11g01937 1016 SUPERFAMILY Formin homology 2 domain (FH2 domain) 381 390 - -
Cmo11g01937 1016 Pfam Protein tyrosine and serine/threonine kinase 441 711 IPR001245 GO:0004672|GO:0006468
Cmo11g01937 1016 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 307 726 - -
Cmo11g01937 1016 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 102 297 - -
Cmo11g01937 1016 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 22 139 - -
Cmo11g01937 1016 Gene3D Phosphorylase Kinase; domain 1 407 514 - -
Cmo11g01937 1016 MobiDBLite consensus disorder prediction 232 258 - -
Cmo11g01937 1016 Gene3D Transferase(Phosphotransferase) domain 1 516 735 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01937 Cmo19g01004 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01937 Cmo-Chr11:13388276 Cmo19g01004 Cmo-Chr19:8914284 0 dispersed
Cmo11g01937 Cmo-Chr11:13388276 Cmo19g01002 Cmo-Chr19:8908460 1.66E-132 wgd
Cmo11g01937 Cmo-Chr11:13388276 Cmo03g00498 Cmo-Chr3:5278539 0 wgd
Cmo11g01937 Cmo-Chr11:13388276 Cmo07g00259 Cmo-Chr7:1270795 2.43E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74699 PF07714 PK_Tyr_Ser-Thr 8.60E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01937 - - csv:101213734 1101.66