Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01944 ATGGGTGGTTGTGTCTCAACGAGTAGCCATAGTACTAGTAGTAGCCAGAGCAATGGGGAATCAGCGTCTTCCTCGTGTTTGGGAATTGAATTTCGAGGTCGAAAACGAACGAAACGAACATTTTCCGACCATGTTTACGCTCTTCAAAAGCTCTCTTCAGCTCCCAACAGGATCTTCATGAACGGGAAGAGTCGTTGTTCGTGCATTTTCACGCAACAAGGTCGCAAGGGCATCAACCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCAGAGGACACGATCTTTTGTGGCGTGTTCGATGGTCACGGACCTTACGGGCATCTCGTTGCTCGAAAAGTTAGAGATACATTGCCTATAAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAAGAGCTCTGCTAAAACGTGTTTCCAGAGGAATTTGAAGACGCCTCGAGAATGTGACGATTCTGAGAAGGATCGTTTTGCCGAGGACTCGCTGAATTCGGTATGGAGAGATGCGTTTTTGAACTCGTATAAAGCTATGGATAAGGAGCTGAGATCACACCCTAATCTGGACTGCTTTTGTAGTGGTAGCACTGCAGTCACCATTGTTAAACAGGGGTCGAATCTGTTCGTGGGGTATATCGGAGACTCTCGTGCAATCCTTGCTTCAAAGGACGTCAATGACTCGACTGTGGCGGTTCAATTGACCGTCGATCTTAAGCCAGATTTGCCGAGAGAAGCTGAAAGAATCAAAAGGTGTAAAGGTAGAGTTTTTGCATTGCAAGATGAGCCTGAAGTGTCGAGGGTATGGTTACCTTTCGACGATGCGCCCGGTTTAGCTATGGCTCGAGCATTTGGCGATTTCTGTTTGAAAGAATACGGAGTTATCTCTATACCTGAATTCTCTCATCGAACGCTCACCGACGCCGATCAGTTCATTGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGAAATAGTGTCCTCGACCCCGACTCGCTCGTCTGCTGCGAGGTCTGTGGTTGACTCTGCTGCTCGTGAATGGAAGCTCAAATACCCCACCTCGAAAATGGACGACTGTGCTGTCGTCTGCTTGTTTCTCGACGGGAAGATGGACTCTGAATCCGACTGTGAAGAACAAGGCTTCTCATCTGCAACATTGCGGAGTAATCATTCAGGTACTGCTGTCGAATCCGACGATGGCCAGAGGTCCGAGCCATGCTTGCAAAGGAACAACACTGTCAGGTCATCAGAAGATAGCAGTAGTTTTGGAGGATTACCAGTCGACGAGGGGGAGACCGGTGATGCTGTACCTGCAGACGATCAAAACTGGTCGGGTTTAGAAGGAGTCACTCGAGTAAACTCGCTTGTTCAACTTCCTAGATTCTCTGATGAAAGGCCAGTGTCATAG 1425 48.0 MGGCVSTSSHSTSSSQSNGESASSSCLGIEFRGRKRTKRTFSDHVYALQKLSSAPNRIFMNGKSRCSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQKSSAKTCFQRNLKTPRECDDSEKDRFAEDSLNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFVGYIGDSRAILASKDVNDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVSRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVEIVSSTPTRSSAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDCEEQGFSSATLRSNHSGTAVESDDGQRSEPCLQRNNTVRSSEDSSSFGGLPVDEGETGDAVPADDQNWSGLEGVTRVNSLVQLPRFSDERPVS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13426857 13429973 - CmoCh11G019440.1 Cmo11g01944 392563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01944 474 MobiDBLite consensus disorder prediction 1 24 - -
Cmo11g01944 474 SMART PP2C_4 55 370 IPR001932 -
Cmo11g01944 474 Gene3D - 58 374 IPR036457 -
Cmo11g01944 474 Pfam Protein phosphatase 2C 150 350 IPR001932 -
Cmo11g01944 474 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Cmo11g01944 474 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 462 - -
Cmo11g01944 474 MobiDBLite consensus disorder prediction 387 428 - -
Cmo11g01944 474 MobiDBLite consensus disorder prediction 387 451 - -
Cmo11g01944 474 PANTHER ALPHABET, ISOFORM E-RELATED 1 462 - -
Cmo11g01944 474 SUPERFAMILY PP2C-like 56 374 IPR036457 -
Cmo11g01944 474 CDD PP2Cc 72 372 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00117 Cmo11g01944 CCT
Cmo11g01944 Cmo19g01011 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01944 Cmo-Chr11:13426857 Cmo20g00582 Cmo-Chr20:2863747 0 dispersed
Cmo11g01944 Cmo-Chr11:13426857 Cmo19g01011 Cmo-Chr19:8942372 0 wgd
Cmo11g01944 Cmo-Chr11:13426857 Cmo02g00117 Cmo-Chr2:615738 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01944 - - csv:101204594 850.121