Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01949 ATGCAGCTCCGCCGTGGCCATGCTACATTTTCGTCTTGTGGGTACTTATGGAGTGGGATAATGTTGGTGAATATGGTCGTGATGGGGAAGTTTCTTCTCGTTGAATCAGCTCGGCCTCAAAACCGTACGTCAGCTTCTCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGTCCCGAAGGCGATGGCAGCGACGGTGGGGCATGTGGGTATGGTAGTTTGGTGGATGTGAAGCCATTTAAGGCGAGAGTTGGTGCAGTGAGCCCTGTCTTATTCAAGGACGGTGAAGGGTGTGGCGCATGCTATAAAGTCCGTTGCTTGGACCGAACCATATGCTCCAAACGAGCCGTTACCATAATAGTCACCGACGAGTGTCCCGGTGGCTATTGCTCCAATGGTCGCACCCACTTCGATCTTAGTGGCGCCGCCTTCGGCCGCATGGCTGTCGCCGGTGCCCACAGCCGTCTCCGCGACCGAGGCGAACTCTCGGTCGCCTACCGACGGACTCCATGTTTGTATCGTGGGAAGAACATAGCCTTCCATGTAAACGAAGGTTCTACCGATCATTGGCTCTCGCTTTTAGTCGAGTTCGAGGATGGTGATGGAGATATTGGTTCTATGCAAATCAAACAAGCAAAGTCGAGCGAGTGGATGGAAATGGCACACGTGTGGGGTGCGACGTGGTGCATAAATGGAGGACCTTTAGAGGGGCCATTCTCGGTGAAGCTAACCACGTTATCCACTGCCAAGACTCTCTCGACTAGAGATGTTATCCCGAAGAATTGGTCACCGAAGGCTACTTATACTTCTCGTTTGAACTTTTTATAA 828 52.9 MQLRRGHATFSSCGYLWSGIMLVNMVVMGKFLLVESARPQNRTSASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPVLFKDGEGCGACYKVRCLDRTICSKRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAVAGAHSRLRDRGELSVAYRRTPCLYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQAKSSEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSTRDVIPKNWSPKATYTSRLNFL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13441695 13443428 - CmoCh11G019490.1 Cmo11g01949 392568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01949 275 Gene3D - 33 171 IPR036908 -
Cmo11g01949 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 270 IPR007117 -
Cmo11g01949 275 PANTHER EXPANSIN-B17 41 274 - -
Cmo11g01949 275 PANTHER EXPANSIN-B3 41 274 - -
Cmo11g01949 275 Pfam Lytic transglycolase 86 150 IPR009009 -
Cmo11g01949 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 176 IPR007112 -
Cmo11g01949 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Cmo11g01949 275 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576|GO:0019953
Cmo11g01949 275 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Cmo11g01949 275 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Cmo11g01949 275 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Cmo11g01949 275 PRINTS Major pollen allergen Lol pI signature 246 263 IPR005795 GO:0005576|GO:0019953
Cmo11g01949 275 Pfam Expansin C-terminal domain 178 259 IPR007117 -
Cmo11g01949 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Cmo11g01949 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cmo11g01949 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Cmo11g01949 275 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Cmo11g01949 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Cmo11g01949 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Cmo11g01949 275 SUPERFAMILY Barwin-like endoglucanases 42 175 IPR036908 -
Cmo11g01949 275 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
Cmo11g01949 275 Gene3D - 173 275 IPR036749 -
Cmo11g01949 275 SMART dpbb_1 84 166 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01949 Cmo20g00212 CCT
Cmo02g00105 Cmo11g01949 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00979 Cmo-Chr6:7713997 Cmo11g01949 Cmo-Chr11:13441695 1.76E-79 dispersed
Cmo11g01949 Cmo-Chr11:13441695 Cmo14g02227 Cmo-Chr14:15798088 4.49E-67 dispersed
Cmo11g01949 Cmo-Chr11:13441695 Cmo02g00105 Cmo-Chr2:562403 3.30E-149 wgd
Cmo11g01949 Cmo-Chr11:13441695 Cmo20g00212 Cmo-Chr20:1024601 1.05E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01949 K20628 - csv:101205324 478.404