Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01957 ATGGATGAATCTCTGCTCGGTGTAGAAAGTAGCAGCAGCTCCAGCTCTCGACGTCAGATTCCTCATGTGAAGTTCAAGCGCCGCTCCGACGCCATCGCTTATGGCTCTGCGTACCAAAGAGCTGCTGCACTCGTGGATCTGGCTGAAGATGGCGTTGGTATACCCGAGAAAATCCTTGATCAGTCGAACTTTCAGAGTGCTGCAAAGCTCTACTTCATTTTTATTAAATTTGATTTGATTTGGTCTGTAAATTTCTTTGCGCTGGTAGTCCTAAATTTCTTTGAGAAACCCTTGTGGTGCTCCAAATACGATACGCATTCTTGTAACGACAGAGAGTATTTCTTTCTTGGGCAGTTGCCTTACTTAACAGCTGTTGAATCTCTTATATATGAGGCTGTGACTCTCATAATACTCATGATACACACTTTTTTCCCAATTTCGTTTGAAGGAGCCCAGCTTTATTGGAAAAATCCCTTGAACCAGTTGAAGGTCATATGCTTAATTATTTTGGTGGCCGATTTTCTCATTTATACCCTATATTTGTCACCAGTGGCCTTTGATTATCTTCCATTCAGAGTTGCACCGTATATTAGAGTTGTCTTTTTCATCATGAATATCAGGCATCTACGGGAGAGCATCATCATTCTAGCTGGAATGCTTGGCACATACTTGAATGTCTTGGCTCTATGGTTTTTGTTTCTTCTGTTTTCCAGCTGGTTGGCATACGTTATTTTTGAGGATACACAGCAGGGGAAATTATTATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACAACATCTAATAATCCAAATGTTTGGATACCTGCCTACAAGGCATCTCGTTGGTATTGCTTGTTTTTTGTTCTGTACGTGCTGTTGGGAGTTTACTTCGTTACAAACTTGATTCTTGCTGTTGTATACGATAGCTTTAAGAGTCAGCTGGCTAAACAAATTTCTGAGATGGACCGCTTGAGGAAAAGTATATTGGCCAAAGCATTTAGTCTTATGGATACTGATAACGTTGGGTTTATCAATAAACAGCAGTGCCTTATACTTCTTGAAGAACTTAACAGATACAGGACTTTGCCAAAGATATCAAGGGATGATTATGAGTTAATATTTGATGAGCTGGATGACAGTCGTGATTTTAAGATCAATATGAATGAGTTTGCTGATCTTTGCAATGCTATAGCCTTGAAGTTTCAGAAGGAGGACATTCCTTCAGTGTTTGAAGCGTATCCTTCGATCTACAATTCAGTTTCTTCAAAAAAGTTGAAAGCATTTGTGCGGAGCCCCTCATTTGGATATGCTATATCCTTTATCCTCATACTGAACCTGGTTGCTGTTATTATTGAAACAACACTCGATATAGAAAATAATGTTGGACAGAAAGCATGGCAAGAACTCGAGTTTGTATTTGGTTGGATATATGTGGTTGAAATGGCTCTAAAAATCTACGCGTTTGGATTTATGAATTATTGGAGAGATGGCCAAAATCAGTTTGATTTCCTTGTCACATGGATTATAGTGATTGGAGAAACCATGACTTTTGTGGCACCTAGTGGACTAACTTTTCTTTCAAATGGAGAATGGATTCGCTACCTTCTGATAGCAAGAATGTTACGCCTGATAAGGCTCCTAATGCATGTCCGGCAATATCGAGCATTTCTTGCTACCTTTTTAACTCTCATCCCTAGCTTGATGCCATATCTAGGAACTATTTTCTGTGTCCTCTGCCTTTATTGCACTCTTGGTGTGCAGGTCTTTGGAGGACTTGTTAACGCTGGAAATCCTGCTTTGTCTAAGACTGATCTGGATGATGATGACTACCTACTTTTCAATTTCAACGACTATCCTAATGGCATGGTGACACTGTTCAATTTGCTAGTTATGGGAAACTGGCAAGACTGGATGCAGAGCTACAAGGAGTTAACAGGAAGTATTTGGAGCCACGTTTATTTCATCAGTTTCTACCTAATAACCGTTTTGCTGCTCTTGAATTTGGTTGTAGCTTTTGTCTTGGAGGCTTTCTTTGCTGAACTGGATATTGAATCTTCAGAAAATGGCGAAGAACAGGAACAGGACGCAGATAGTAGAAAGGATCGTCGACGTTTCGTCGGCACAAAAACTAGGAGCCGCAAAGTTGACATTCTTCTCCATCATATGTTGAGTGCAGAATTGGATGGAAAGGATTCCGATTAG 2217 39.92 MDESLLGVESSSSSSSRRQIPHVKFKRRSDAIAYGSAYQRAAALVDLAEDGVGIPEKILDQSNFQSAAKLYFIFIKFDLIWSVNFFALVVLNFFEKPLWCSKYDTHSCNDREYFFLGQLPYLTAVESLIYEAVTLIILMIHTFFPISFEGAQLYWKNPLNQLKVICLIILVADFLIYTLYLSPVAFDYLPFRVAPYIRVVFFIMNIRHLRESIIILAGMLGTYLNVLALWFLFLLFSSWLAYVIFEDTQQGKLLFTSFGATLYQMFILFTTSNNPNVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSQLAKQISEMDRLRKSILAKAFSLMDTDNVGFINKQQCLILLEELNRYRTLPKISRDDYELIFDELDDSRDFKINMNEFADLCNAIALKFQKEDIPSVFEAYPSIYNSVSSKKLKAFVRSPSFGYAISFILILNLVAVIIETTLDIENNVGQKAWQELEFVFGWIYVVEMALKIYAFGFMNYWRDGQNQFDFLVTWIIVIGETMTFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMHVRQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCTLGVQVFGGLVNAGNPALSKTDLDDDDYLLFNFNDYPNGMVTLFNLLVMGNWQDWMQSYKELTGSIWSHVYFISFYLITVLLLLNLVVAFVLEAFFAELDIESSENGEEQEQDADSRKDRRRFVGTKTRSRKVDILLHHMLSAELDGKDSD 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13470334 13486186 + CmoCh11G019570.1 Cmo11g01957 392576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01957 738 SUPERFAMILY Voltage-gated potassium channels 436 682 - -
Cmo11g01957 738 Gene3D - 317 400 - -
Cmo11g01957 738 Pfam Ion transport protein 437 682 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo11g01957 738 Pfam Ion transport protein 135 318 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo11g01957 738 Gene3D - 562 721 - -
Cmo11g01957 738 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 735 IPR044581 GO:0005245
Cmo11g01957 738 Gene3D - 208 316 - -
Cmo11g01957 738 MobiDBLite consensus disorder prediction 1 19 - -
Cmo11g01957 738 SUPERFAMILY EF-hand 325 418 IPR011992 -
Cmo11g01957 738 CDD EFh 334 398 IPR002048 GO:0005509
Cmo11g01957 738 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Cmo11g01957 738 MobiDBLite consensus disorder prediction 1 21 - -
Cmo11g01957 738 Gene3D - 428 561 IPR027359 -
Cmo11g01957 738 SMART efh_1 374 402 IPR002048 GO:0005509
Cmo11g01957 738 SMART efh_1 333 361 IPR002048 GO:0005509
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01957 Cmo19g01026 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01957 Cmo-Chr11:13470334 Cmo19g01026 Cmo-Chr19:8991580 3.98E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01957 K16900 - csv:101206980 1305.81