Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01960 ATGTCTTGTTCTTCAATCACTCTGTTCTGCGCTGTAATTTCGATTCTAATCTCCATTTCCCTCTCAGTCTCCGCTACAGAGTTCATCTTCAACACGAATTTCACTTCCACTAATATTCTGCTCTTCGGCAACGCCACCGTTGATTCATCCGTTCTTATTCTCACAAGGGATTCAACTTTCACCATCGGCCGTGCTCTATACCCTTCCAAAATCCCGATCCGTTTCTCCGATTCTTCTTTTTCCTTTGCAACTTCCTTCATCTTCTCCGTCACTCCACAGCCAAATCATCTCCCCGGCCATGGATTCGCCTTTCTCTTCACACCTTCTACTGGAATCAATGGCACGAGCTCGGCTCAGAATTTGGGGCTTTTCAATTTCACCACTAATGGTAACCCTAATAACCATGTCTTCGCTATTGAGTTCGATTCCTTCCAAAATCAAGAGTTCAACGACTCGAATGATAACCATGTGGGTGTAGATTTGAATTCTCTTGAGTCTACTGCCTCATCTACAGCAGGGTTTTGGAATGAACATGGAGAATTCAAGGAGTTGAGGATCAACAATGGAGAAATTTATCAGGTTTGGATTGAATGCTTAAACTCTTTGGTTAATATTACAATGGCTGAATTGGGAATGAGAAAGCCTAGAAAACCATTGATATCTCTGTCTGTGAATTTCTCTGAATTGCTTTTGGATGAGATGTTTGTAGGATTTACAGCCTCCACAGGGCAATTAGTTCAAAGCCATAAGATATTATCATGGAGTTTTAGTACCTCTAATTTGTCAATTGGTGATGCTTTAGTAAGAACGAATTTGCCATCATTTGCTCCTCATAATGACTCTATTTTTAACTCAATAGCTTTCATTGTGGGGATAATTGTGGGTGGTTCTGGGCTTGTGATCATCTGTTGTATTGTGGTCTATGTTCTTGTAATTATCAAAAGAAGGGGAACAAAGAAACCAATGGATGATGATATTGAAGATTGGGAGTTGGAATATTGGCCTCATCGGTTTGCTTATGATGATGTTTATGCAGCAACTGATGGGTTCTCAGAGGCCAATGTTGTTGGCTTTGGGCGTAATGGAATGGTCTATAAAGGGGAATTAGGGAGATCAAAGGTTGCTGTGAAGAAAATCTCTGTTGAATCTGAGTGTGGAATGAGGGAGTTTATGGCCGAGATTTCGAGTCTCAGACGATTAAAACATAGAAATTTAGTGAAACTTATAGGATGGTGCAAGAAAGAGAAGGGAAGCTTGATCTTAATGTATGAATTCATGGAAAATGGAAGTTTAGACAAGAAGTTGTTCGAGTGTGATGAGAATACGACGCTGAGTTGGGAGAAAAGGATGAAGGTTTTGAGCGATGTAGCGACGGGGCTGCTATATCTGCATCAAGGTTGGGATTACAAGGTTATACATAGTGACATTAAAGCAAACAACGTGCTACTCGACAGGGACATGAACGCAAGGTTAGGAGACTTCGGGTTGGCTCGAATGCAACCCAACAAGAGAACGGTAGACAAAAAGCGAGTGGTGGGAACTGTTGGGTACTTGGCGCCGGAGGTAGTTCGAACAGGGCGAGTATCGATGCAAGGCGACGTTTTCGGGTTCGGGGTGTTGGTTTTGGAGGTGGTTTGTGGGCGGAGAGCGATGGAAGAAGGGAAGCCATTGTTGGTAGATTGGATGAGAGGAGTAATGGAGAGGAATGAGATTGTAGTGGCTGTTGATGAGAGATTGAAAGTTGAAGAGGTTGGAGAAGAGATTGATGAAATGGAGAGAATGGTTTGTTTGGGATTATTATGTGCACATCCTGAGGCTGGTGCAAGGCCAACAATGCAACAAGTTATGAACATTTTGGGTGAGATAAACAAAGATAACTCAAATCATCGAACGTTTGAACAAATCAAAACATCTTCTTCTTCAACATCCTTTGTTGAATCAGACGTTTTAAAGAGTGGTCGCTAG 1965 42.04 MSCSSITLFCAVISILISISLSVSATEFIFNTNFTSTNILLFGNATVDSSVLILTRDSTFTIGRALYPSKIPIRFSDSSFSFATSFIFSVTPQPNHLPGHGFAFLFTPSTGINGTSSAQNLGLFNFTTNGNPNNHVFAIEFDSFQNQEFNDSNDNHVGVDLNSLESTASSTAGFWNEHGEFKELRINNGEIYQVWIECLNSLVNITMAELGMRKPRKPLISLSVNFSELLLDEMFVGFTASTGQLVQSHKILSWSFSTSNLSIGDALVRTNLPSFAPHNDSIFNSIAFIVGIIVGGSGLVIICCIVVYVLVIIKRRGTKKPMDDDIEDWELEYWPHRFAYDDVYAATDGFSEANVVGFGRNGMVYKGELGRSKVAVKKISVESECGMREFMAEISSLRRLKHRNLVKLIGWCKKEKGSLILMYEFMENGSLDKKLFECDENTTLSWEKRMKVLSDVATGLLYLHQGWDYKVIHSDIKANNVLLDRDMNARLGDFGLARMQPNKRTVDKKRVVGTVGYLAPEVVRTGRVSMQGDVFGFGVLVLEVVCGRRAMEEGKPLLVDWMRGVMERNEIVVAVDERLKVEEVGEEIDEMERMVCLGLLCAHPEAGARPTMQQVMNILGEINKDNSNHRTFEQIKTSSSSTSFVESDVLKSGR 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13491556 13493520 + CmoCh11G019600.1 Cmo11g01960 392579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01960 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Cmo11g01960 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 261 IPR013320 -
Cmo11g01960 654 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01960 654 Pfam Legume lectin domain 26 260 IPR001220 GO:0030246
Cmo11g01960 654 Gene3D Phosphorylase Kinase; domain 1 335 425 - -
Cmo11g01960 654 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Cmo11g01960 654 SUPERFAMILY Protein kinase-like (PK-like) 325 619 IPR011009 -
Cmo11g01960 654 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 15 633 - -
Cmo11g01960 654 PANTHER - 15 633 - -
Cmo11g01960 654 Gene3D - 24 265 - -
Cmo11g01960 654 SMART serkin_6 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01960 654 CDD lectin_legume_LecRK_Arcelin_ConA 26 259 IPR001220 GO:0030246
Cmo11g01960 654 Coils Coil 574 594 - -
Cmo11g01960 654 ProSiteProfiles Protein kinase domain profile. 350 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g01960 654 Gene3D Transferase(Phosphotransferase) domain 1 426 646 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00098 Cmo11g01960 CCT
Cmo11g01960 Cmo20g00222 CCT
Cmo02g00098 Cmo11g01960 ECH
Cmo11g01960 Cmo20g00222 ECH
Cmo11g01960 Cmo19g01029 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01960 Cmo-Chr11:13491556 Cmo14g00123 Cmo-Chr14:542648 5.26E-152 dispersed
Cmo11g01960 Cmo-Chr11:13491556 Cmo13g00661 Cmo-Chr13:6954194 0 wgd
Cmo11g01960 Cmo-Chr11:13491556 Cmo18g00348 Cmo-Chr18:2278900 0 wgd
Cmo11g01960 Cmo-Chr11:13491556 Cmo19g01029 Cmo-Chr19:9010459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74700 PF00069 Pkinase 2.40E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01960 - - csv:101216388 989.178