Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01966 ATGGTGGATGCAATGAAGAATGTTGCAAAGCTTGATGTCGAATTGACAGTGGAGGAAAGAAATTTACTCTCTGTTGGGTACAAGAATGTGGTTGGTGCAAGGAGAGCCTCATGGAGGATTTTATCATCAATAGAGCAGAAAGAAGAAGCTAAAGGAAATGAAACAAATGCCAAACGCATCAAGGAGTACAGACAAAAGGTTGAAACAGAGCTCTCTGGTATTTGTACTGATATCATGACAGTGATTGACGAACACCTAATTCCCTCTGCTTCAGCTGGGGAATCAACAGTGTTCTACTATAAGATGAAAGGAGATTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGAAAGCATATGAGGCTGCAACTAGCTCAGCCGAATCTGAATTGCCTCCTACACATCCTATCCGCTTGGGTTTGGCATTAAATTTCTCTGTCTTCTATTATGAAATCCTGAATTCACCTGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGGAGCCATCTCCGAACTTGACACCCTCAATGAGGAGTCTTACAAAGATAGCACCTTAATCATGCAGCTTCTTAGAGACAACCTCACATTATGGACTTCTGACATCCCAGAGGATGGAGATGATGCTCAAAAGGTCAACGGCACTGTCAAAGTTGCCGGTGGCGACGATGAGCTTGCTCTGGCATTTCAATCTTCGAGAAGGAAGAAATTGGCAAGCCAACTGATTCAAATCGAACAAGAATTTTGCAGTTGGCATACATTCAGCGTTATCCGCATTGAAGTAATCGTCAAAACCCACCGTTTCCGTCCTTTTTCATTGTTCAATCTCCGCGAAGAACAGAGCAGAGCGGAAATAACCACAATCTGTCTTCTGGACGATCGGAAATATCCAATCTCACTCCCAACTTGCGAAGGCGATCGTTCTTCCTCTCTCACATTCCATCTGTATCGAATTCTGATTCTGAGATGTGCTCCCAATTCCGTTCGTGGATTATTCACCGATCTATTTCATTCACTCGCAGACTTAATTTCAGATTTATTACCTTCGATTGCGATGAATTCCTTTGATTCTGAACTTGGTAGAGCTTCTGCCGTGATTCTCGATCTCGATGGAACCCTTTTGGACACTGAGAGGGCGACAAAAGACGTGTTGAAGGATTTCTTGGCAAAATATGGAAAGGATTTGGATAAAAAGAGGGAAGAGGAGAAGAGATTGGGAATGACTCAGAAAGAATCAGCGGCTGCAATCATCAATGCTAATTTGAGTGATTATAGCTATAATGTTGTTTTCCAGCTTCCCGGTTGGAAGGATTGGTTCTCTGTGATTCTTGGTAGTGACCAGGTTATTCAAGGGAAACCTGCTCCTTATCTATTTGAAGAGGCAGCGAAGAGGATGGGCGTAGATGCTTCTCATTGTTTGGTCATTGAAGATTCCTTGGTTGGTGTCAAAGCAGCCAAGGCTGCCAAGATGAAGGTTGTAGCTGTCCCATCCCATGGAGAAGTTGAATGCTCTTCCCTAGCAGATAAAGTGCTTCATTCTTTACTAGAATTTCAGCCTGAGCTGTGGGGTCTTCCCCCATTTGAAGACTGGGTAGATAGGAGCTTACCTATTGATCCAATACATCTGAGCTCTCAATATGTTAATGGGTCCATAAGTGAAATCTCAGATCATGATGAGTTTAATGCATGGTTTTCAGAGGATCCATCATTGCCCGACCAAGTTTTTGGAACGTTCATCGGTTGGGCTGGCACTGGTACGGCTTGGACCATCAAGGTTGTGGTTAACATCGGATGGAATTGCAGTTCCTGTACTAAACAGAAAAGGATTTGGAAACTATGGCCAGTGGACGGATGCGATAGCAAAGTATTTGAGCAGCAAATGCAACTCATGCTTGTTGGCTACATCTGCAGATTGAATTGCAAGGATCTTGCAACCATGGATGCGAGAGAGATTGAAGAGTTCAAGTATATAGCGAACACTTTGCTCGACCAACCCATGTTTGTCAACGGTTCTTGCACATCTCTTACTGCAGAAGCAACTTCTGGCATGGATGAATAA 2091 43.28 MVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNETNAKRIKEYRQKVETELSGICTDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFKSGNEKKDAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDGAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKVNGTVKVAGGDDELALAFQSSRRKKLASQLIQIEQEFCSWHTFSVIRIEVIVKTHRFRPFSLFNLREEQSRAEITTICLLDDRKYPISLPTCEGDRSSSLTFHLYRILILRCAPNSVRGLFTDLFHSLADLISDLLPSIAMNSFDSELGRASAVILDLDGTLLDTERATKDVLKDFLAKYGKDLDKKREEEKRLGMTQKESAAAIINANLSDYSYNVVFQLPGWKDWFSVILGSDQVIQGKPAPYLFEEAAKRMGVDASHCLVIEDSLVGVKAAKAAKMKVVAVPSHGEVECSSLADKVLHSLLEFQPELWGLPPFEDWVDRSLPIDPIHLSSQYVNGSISEISDHDEFNAWFSEDPSLPDQVFGTFIGWAGTGTAWTIKVVVNIGWNCSSCTKQKRIWKLWPVDGCDSKVFEQQMQLMLVGYICRLNCKDLATMDAREIEEFKYIANTLLDQPMFVNGSCTSLTAEATSGMDE 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13528927 13538227 - CmoCh11G019660.1 Cmo11g01966 392585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01966 696 Gene3D Putative phosphatase; domain 2 387 430 IPR023198 -
Cmo11g01966 696 SUPERFAMILY HAD-like 375 537 IPR036412 -
Cmo11g01966 696 PANTHER 14-3-3 PROTEIN 1 221 IPR000308 -
Cmo11g01966 696 Gene3D - 445 523 IPR023214 -
Cmo11g01966 696 Pfam Haloacid dehalogenase-like hydrolase 426 506 IPR041492 -
Cmo11g01966 696 Gene3D - 1 224 IPR036815 -
Cmo11g01966 696 Pfam 14-3-3 protein 1 210 IPR023410 -
Cmo11g01966 696 PRINTS 14-3-3 protein zeta signature 94 116 IPR000308 -
Cmo11g01966 696 PRINTS 14-3-3 protein zeta signature 14 43 IPR000308 -
Cmo11g01966 696 PRINTS 14-3-3 protein zeta signature 156 182 IPR000308 -
Cmo11g01966 696 PRINTS 14-3-3 protein zeta signature 63 87 IPR000308 -
Cmo11g01966 696 PRINTS 14-3-3 protein zeta signature 183 212 IPR000308 -
Cmo11g01966 696 PRINTS 14-3-3 protein zeta signature 129 155 IPR000308 -
Cmo11g01966 696 CDD HAD_BPGM-like 375 490 - -
Cmo11g01966 696 PANTHER 14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED 1 221 - -
Cmo11g01966 696 Gene3D - 376 386 IPR023214 -
Cmo11g01966 696 ProSitePatterns 14-3-3 proteins signature 2. 192 211 IPR023409 -
Cmo11g01966 696 SMART 1433_4 1 223 IPR023410 -
Cmo11g01966 696 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 458 506 IPR006439 -
Cmo11g01966 696 ProSitePatterns 14-3-3 proteins signature 1. 20 30 IPR023409 -
Cmo11g01966 696 SUPERFAMILY 14-3-3 protein 2 219 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01966 Cmo-Chr11:13528927 Cmo12g00080 Cmo-Chr12:434239 7.05E-125 dispersed
Cmo11g00389 Cmo-Chr11:1943530 Cmo11g01966 Cmo-Chr11:13528927 4.88E-13 transposed
Cmo13g00697 Cmo-Chr13:7120389 Cmo11g01966 Cmo-Chr11:13528927 7.77E-39 transposed
Cmo11g01966 Cmo-Chr11:13528927 Cmo19g01060 Cmo-Chr19:9198427 3.48E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01966 K06630 K20884 csv:101207959 467.618