Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01977 ATGGCGTCCATTTCCCATCTTTTCATTGTTCTTTCCCTTTTAGCCTTCTCAGCCAATGCTCAGCTCTCAGCCAACTTTTACGCGAAAAGCTGTCCCAATCTCAAACGAACCGTTCGTTCCATTATGACCAAAGCTGTTATCGCAGAAAAACGTATGGGAGCTTCAATTCTTCGCCTGTTCTTCCACGACTGCTTTGTTAATGGTTGTGATGGTAGTATATTGCTCGATGATACACTGACATTTACGGGCGAAAAGAATGCATTTCCTAATCGAGATACAGCTAGAGGGTTCGAAGTGATTGACAAAATTAAAACCGAAGTCGAAGCTACTTGCAAGAACACCGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTCGAGATGGGGTTGATTTGCTTGGAGGTCCTGATTGGAATGTACTACTCGGTCGGAAGGATTCGAGGACGGCGAGCGAGAGTGACGCTAACAACAACCTCCCGGGGCCAGGCTCCGACCTCCCAACGCTCATCTCTATGTTCAATGCCAAAGGCTTCAACGCCAATGAGATGACTGCCCTCTCCGGCGCCCACACTATTGGTATGGCTAGTTGTCGATTCTTCCGAAGACGCATTTACAACGATACCAACATCAATCCCGCCTTCGCCGAACAGCGGAGAGACAACTGTCCGTTCACAGGCGGCGACGCGAACTTGGCCCCTCTCGACTCGACCACCCAGAGGTTCGACAACCAATATTTCAAAGACTTGATTCAACAGCGCGGGCTGTTACATTCGGACCAAGAGCTCTTCAACGGCGGCTCACAAGACGCCTTGGTTCAGACTTACAGTAAAAGTCTCCTAACCTTTAGATGGGATTTCGTTAAAGCAATGATTAAGATGGGGAATCTCAGTCCTCCACCTGGATTACCCACTGAGATTAGACGAAATTGCAGGAAATTGAAACGGCGAGACCTCGGTGTTCTCTCAATCTCACATTGCCTTCTGATTTGTAGCGCTTATCGCATTTCATTGTCGGCTACCGGAGATTCTGCGGCTTTGGCTTTGGCTTTGGAAATGATCCTCTGA 1062 48.21 MASISHLFIVLSLLAFSANAQLSANFYAKSCPNLKRTVRSIMTKAVIAEKRMGASILRLFFHDCFVNGCDGSILLDDTLTFTGEKNAFPNRDTARGFEVIDKIKTEVEATCKNTVSCADILALAARDGVDLLGGPDWNVLLGRKDSRTASESDANNNLPGPGSDLPTLISMFNAKGFNANEMTALSGAHTIGMASCRFFRRRIYNDTNINPAFAEQRRDNCPFTGGDANLAPLDSTTQRFDNQYFKDLIQQRGLLHSDQELFNGGSQDALVQTYSKSLLTFRWDFVKAMIKMGNLSPPPGLPTEIRRNCRKLKRRDLGVLSISHCLLICSAYRISLSATGDSAALALALEMIL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13592179 13594321 + CmoCh11G019770.1 Cmo11g01977 392596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01977 353 Gene3D Peroxidase, domain 2 159 292 - -
Cmo11g01977 353 CDD secretory_peroxidase 21 311 IPR033905 GO:0004601|GO:0042744
Cmo11g01977 353 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 231 246 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 247 264 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 Pfam Peroxidase 38 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 ProSiteProfiles Plant heme peroxidase family profile. 21 313 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 SUPERFAMILY Heme-dependent peroxidases 21 311 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Cmo11g01977 353 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Cmo11g01977 353 Gene3D - 25 310 - -
Cmo11g01977 353 PANTHER PEROXIDASE 15 312 - -
Cmo11g01977 353 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo11g01977 353 PANTHER PEROXIDASE 72-RELATED 15 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01977 Cmo-Chr11:13592179 Cmo15g00169 Cmo-Chr15:782241 7.35E-125 dispersed
Cmo20g00343 Cmo-Chr20:1681636 Cmo11g01977 Cmo-Chr11:13592179 6.88E-109 dispersed
Cmo11g01977 Cmo-Chr11:13592179 Cmo19g01052 Cmo-Chr19:9135234 1.32E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01977 K00430 - csv:101208932 465.307