Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01994 ATGAGTAGTGTTTGTGCTGAGAATCAGAAATATCAGTTTCATTTTCAATTTCCTCCTTCTTCTTCTACTTCTGATTTTGTTGTTTCTGAGAGGATTCCTTTTCTGAAGGATATTAACGTTCCGCCGAGGAAGCTTCTTGCGGCGCGACGAGATCAAAACGCTGAAATGTGTTCTGATTCGCCGCGATTCTCGTTTGCTGTTGAATCGCTTTTGCAGAAGTTTTTGCCGTTCAATGGCGAGGATGAGGCGGAGGAGGACGGCGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCTCGTCGGCGGGATCCTCGTCGGTTTCATTACTCCGGCACGATGTGTCCGGAGTTCCGGCGTGGTGGATGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTCTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCGCCGGTGAGTAACTTTCAAGGCGGTGGCTCTTGTTCTTCGCCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTTCTAATCACTGCTGCTTGTTTTGTCATTGCGGTGGAGCCGCCACCTCCTCGCCGACGTCGACTCTTTTCGGAATGTCTCATCTCTCTCCGCCGCACTCACCACCGCTCTCGCCGGGAAATCCTCGGTCGATGAATGGATTTTCGCCTATTTCAAGGTATAGTAATCCTGATCAGTCTAAGTTAAAGGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCTATTGAATCCATGAATATCGACGACGCTAATGCCACTTTAGCGGCCGCCATCCCCGCCCCTAGACCAACGCCTTGGATCGATGTTTCATCTCTTAATCCTGAAGATCAACTGCAGTTTATTCTCTCCCCTTCCACTCCAAACATCTCCGCCGCGGCGAACTTAACCTGCGAGCATAAATCTAACGCCGACAATGGATGGGCCTCCACCTCCGGTCCCGATCTCGGATGGAACGAGACTCATTACGAAATGACGTTGCAACATTTAACCTACAGCCAAAAGATGGGAGCTTACTTGGTCTCCAAAGTCACTACAAAAGCCTGTAACCAAATGCACCCAGATAGAGCCACCATTGAAACCTCCACCATTTCACTCTTTTCGTTAGCATAG 1293 49.34 MSSVCAENQKYQFHFQFPPSSSTSDFVVSERIPFLKDINVPPRKLLAARRDQNAEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAAAIPAPRPTPWIDVSSLNPEDQLQFILSPSTPNISAAANLTCEHKSNADNGWASTSGPDLGWNETHYEMTLQHLTYSQKMGAYLVSKVTTKACNQMHPDRATIETSTISLFSLA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13660997 13666869 - CmoCh11G019940.1 Cmo11g01994 392613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01994 430 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872
Cmo11g01994 430 PANTHER UNKEMPT FAMILY MEMBER 37 378 IPR045234 -
Cmo11g01994 430 Gene3D - 134 197 - -
Cmo11g01994 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 37 378 - -
Cmo11g01994 430 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Cmo11g01994 430 SMART c3hfinal6 169 192 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01994 Cmo-Chr11:13660997 Cmo10g00717 Cmo-Chr10:3287572 7.59E-62 dispersed
Cmo11g01994 Cmo-Chr11:13660997 Cmo19g01036 Cmo-Chr19:9049904 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10675 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01994 K23047 - csv:101211149 561.222