Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo11g01995 | ATGACCACCGGAAGAGAAATTCTCCACAAAATGAAGGTGAAGGCAGGGTTTTGTTCTTCGGCGCCGGATACTGCTGCCAAAGGGAAGGCCAAAGCGACCAAGAATCATGTAAGCCATGGCAGCCATTTGGTTAAGGGCAAGACCAACCACCCCATGGAAGATTACTTGGTCACTGATTTCAAGCGCGTCAAGGACCACGACTTGGGTTTGTTTGCCATTTTCGACGGCCATTTGGGCCATGATGTTGCCAATTTCTTGCAGAATAATCTCTTTGATAATATCCTCAAACAGGCTGATTTCTGGAGCGAAACGAGAAAGGCCATAAAAAGAGCGTACAAGAAAACCGACGATGAAATATTGGATAAAGTAAAGCAGCTGGGGAGAGGAGGATCAACGGCGGTAACCGCCATATTGATCGACGGCCACAAACTCATCGTTGCCAACGTCGGAGATTCCAGAGCCGTTCTTTGCAAAAACGGCGTCGCTGAGCAGCTCTCCGTTGACCACGAACCCAGTAAAGAAAAAAGGGATATTGAAAGCCGTGGAGGCTTCGTATCAAATCTTCCAGGCGATGTGCCACGTGTCGACGGACAATTGGCTGTTGCGAGAGCATTTGGTGATAAGAGCTTGAAACTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTGGATGAATCTACAGAGTTCATGATTTTGGCTAGCGATGGCATTTGGAAGGTAATGACAAACAAAGAGGCGGTGGAATCTATTAGACACATAAAGGATGCGAACGTGGCAGCCAAACGACTTATCGATGAAGCAGTATCCAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCGGTGA | 861 | 47.5 | MTTGREILHKMKVKAGFCSSAPDTAAKGKAKATKNHVSHGSHLVKGKTNHPMEDYLVTDFKRVKDHDLGLFAIFDGHLGHDVANFLQNNLFDNILKQADFWSETRKAIKRAYKKTDDEILDKVKQLGRGGSTAVTAILIDGHKLIVANVGDSRAVLCKNGVAEQLSVDHEPSKEKRDIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDVEVKTVDESTEFMILASDGIWKVMTNKEAVESIRHIKDANVAAKRLIDEAVSRKSKDDISCIVVRFR | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 13667941 | 13669605 | - | CmoCh11G019950.1 | Cmo11g01995 | 392614 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo11g01995 | 286 | Pfam | Protein phosphatase 2C | 49 | 278 | IPR001932 | - | |
| Cmo11g01995 | 286 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 285 | IPR015655 | GO:0004722|GO:0006470 | |
| Cmo11g01995 | 286 | CDD | PP2Cc | 37 | 285 | IPR001932 | - | |
| Cmo11g01995 | 286 | SMART | PP2C_4 | 34 | 283 | IPR001932 | - | |
| Cmo11g01995 | 286 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 3 | 285 | - | - | |
| Cmo11g01995 | 286 | SUPERFAMILY | PP2C-like | 34 | 285 | IPR036457 | - | |
| Cmo11g01995 | 286 | Gene3D | - | 14 | 286 | IPR036457 | - | |
| Cmo11g01995 | 286 | ProSiteProfiles | PPM-type phosphatase domain profile. | 38 | 285 | IPR001932 | - | |
| Cmo11g01995 | 286 | SMART | PP2C_SIG_2 | 43 | 285 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo08g01051 | Cmo-Chr8:6782247 | Cmo11g01995 | Cmo-Chr11:13667941 | 3.52E-38 | dispersed | |
| Cmo11g01995 | Cmo-Chr11:13667941 | Cmo16g00270 | Cmo-Chr16:1199573 | 3.35E-96 | dispersed | |
| Cmo16g00070 | Cmo-Chr16:317145 | Cmo11g01995 | Cmo-Chr11:13667941 | 1.91E-55 | dispersed | |
| Cmo17g00153 | Cmo-Chr17:876528 | Cmo11g01995 | Cmo-Chr11:13667941 | 3.88E-39 | dispersed | |
| Cmo18g01333 | Cmo-Chr18:12654519 | Cmo11g01995 | Cmo-Chr11:13667941 | 2.03E-53 | dispersed | |
| Cmo11g01995 | Cmo-Chr11:13667941 | Cmo09g00846 | Cmo-Chr9:4340957 | 1.67E-136 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo11g01995 | K17506 | - | csv:101211399 | 503.056 |