Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01999 ATGGCTTCGTTCCCGTTCCCGTTCTTGTTCTCGTCCTCGTCCCTGTCCTCCAAAGCTTTGTTCTTGTTACTCCTTCATTTGTCTTGTCTGTTTAAGAGCTTGAGCGCCAAACATGGTGTCGTAGTCACTCATAATGACCACCACCACCACCACCATGCTCGATCACCGAGCACGAACCCGAGACTCCACCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAGGTCATTTACTCTGACCCAAAAAACCATACTACCAATTGGGTAGGGCCTTCAGTTTGCAGCTACTTTGGAGTATACTGTGCCCCATCTCTCAACGACTCAAATGTTCAGGTTGTCGCCGGAATCGACTTAAACCACGGCGACATTGCTGGATTCCTTCCTAATGAATTAGGCCTTTTAAAAGACCTTTCTCTGCTCCATCTCAACAGCAACCGATTCTGCGGCGTTTTGCCTCAATCTTTAGCCAATTTGTCTCTCCTCTTCGAATTAGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCATCTTCCAAACTTAACATATCTCGACCTTCGATTCAACGAATTTGAAGGCCAAATTCCCCCTGAACTCTTCAACAAAAGCCTCGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATAATCCCTCGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACGAGTTTATCAGGCTGTTTGCCCCAAGAAATTGGGTTCTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAATGAATTAATGGGTCCTTTGCCGTATAGTTTAGCTGGGTTGGGTCAATTGGAGCAATTGAATTTGGCTCACAATTTGTTTACTGGGAATTTGTTTGAAGGGCTTTGTAACCTTCCGAATTTGGAGAATGTGACGGTTTCGTATAATTACTTTTGTGAGGAAGAAGGGGTTTGCCGGAATTTGACGGCGGAAGGGGTTGCTTTTGACGATCGTCGGAATTGTGTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGTGGCGGTGGTTATGGTTCAAGTATTGCGGCGGCTCCGGCTTCGGCGCCTATTTCTGCAACTTCTTCCGTTGTTGCCCCTGCCCACTTGTGA 1254 45.85 MASFPFPFLFSSSSLSSKALFLLLLHLSCLFKSLSAKHGVVVTHNDHHHHHHARSPSTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCSYFGVYCAPSLNDSNVQVVAGIDLNHGDIAGFLPNELGLLKDLSLLHLNSNRFCGVLPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPNLTYLDLRFNEFEGQIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELMGPLPYSLAGLGQLEQLNLAHNLFTGNLFEGLCNLPNLENVTVSYNYFCEEEGVCRNLTAEGVAFDDRRNCVPEKPLQRSKKECSAVVERPVDCFEHPCGGGYGSSIAAAPASAPISATSSVVAPAHL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13687292 13688545 + CmoCh11G019990.1 Cmo11g01999 392618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01999 417 Pfam Leucine rich repeat N-terminal domain 65 100 IPR013210 -
Cmo11g01999 417 Gene3D Ribonuclease Inhibitor 65 231 IPR032675 -
Cmo11g01999 417 SMART LRR_typ_2 133 156 IPR003591 -
Cmo11g01999 417 SMART LRR_typ_2 300 320 IPR003591 -
Cmo11g01999 417 SMART LRR_typ_2 181 205 IPR003591 -
Cmo11g01999 417 SMART LRR_typ_2 276 299 IPR003591 -
Cmo11g01999 417 Gene3D Ribonuclease Inhibitor 232 352 IPR032675 -
Cmo11g01999 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 18 412 - -
Cmo11g01999 417 PANTHER EXTENSIN-LIKE PROTEIN 18 412 - -
Cmo11g01999 417 Pfam Leucine rich repeat 136 193 IPR001611 GO:0005515
Cmo11g01999 417 SUPERFAMILY L domain-like 65 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01999 - - - cmos:111437069 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01999 Cmo-Chr11:13687292 Cmo14g01778 Cmo-Chr14:13715371 3.30E-124 dispersed
Cmo11g01999 Cmo-Chr11:13687292 Cmo12g01271 Cmo-Chr12:11268328 9.01E-128 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01932 . 61 291 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 5.6e-53 206.8
Cmo14g01778 CST 43 271 Leucine-rich Repeat extension Gene Families AT1G62440 65.1 5.5e-48 190.3
Cmo08g00870 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 57.5 4.8e-44 177.2
Cmo12g01271 CCT 93 444 Leucine-rich Repeat extension Gene Families AT1G62440 61.9 5.3e-43 173.7
Cmo11g00596 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 2.9e-41 167.9
Cmo10g00642 CCT 61 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 5.5e-40 163.7
Cmo17g00425 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 1.5e-37 155.6
Cmo11g00596 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 5.6e-66 250.0
Cmo12g01271 CCT 38 444 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 2.1e-65 248.1
Cmo10g00642 CCT 14 412 Leucine-rich Repeat extension Gene Families AT4G13340 70.3 1.6e-60 231.9
Cmo14g01778 CST 43 367 Leucine-rich Repeat extension Gene Families AT4G13340 71.2 1.9e-53 208.4
Cmo01g01932 . 17 262 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 3.3e-50 197.6
Cmo08g00870 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 1.1e-48 192.6
Cmo08g00869 . 26 150 Leucine-rich Repeat extension Gene Families AT4G13340 58.4 4.2e-37 154.1
Cmo06g01390 CST 14 367 Leucine-rich Repeat extension Gene Families AT4G13340 59.7 2.1e-36 151.8
Cmo11g00596 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 1.3e-71 268.1
Cmo12g01271 CCT 68 440 Leucine-rich Repeat extension Gene Families AT3G24480 74.4 1.3e-71 268.1
Cmo10g00642 CCT 27 414 Leucine-rich Repeat extension Gene Families AT3G24480 69.9 9.6e-67 251.9
Cmo01g01932 . 25 262 Leucine-rich Repeat extension Gene Families AT3G24480 60.7 6.0e-53 206.1
Cmo14g01778 CST 43 366 Leucine-rich Repeat extension Gene Families AT3G24480 67.4 3.0e-52 203.8
Cmo08g00870 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 57.8 1.6e-50 198.0
Cmo17g00425 . 30 225 Leucine-rich Repeat extension Gene Families AT3G24480 64.0 1.4e-41 168.3
Cmo08g00869 . 17 150 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 5.5e-38 156.4
Cmo06g01390 CST 28 367 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 3.9e-36 150.2
Cmo14g01778 CST 15 366 Leucine-rich Repeat extension Gene Families AT3G22800 68.8 2.4e-67 253.8
Cmo06g01390 CST 7 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 1.0e-49 195.3
Cmo11g01999 . 56 388 Leucine-rich Repeat extension Gene Families AT3G22800 59.9 1.1e-40 165.2
Cmo11g00596 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 61.9 5.2e-38 156.4
Cmo01g01932 . 63 291 Leucine-rich Repeat extension Gene Families AT3G22800 53.9 2.0e-37 154.5
Cmo12g01271 CCT 79 438 Leucine-rich Repeat extension Gene Families AT5G25550 62.7 3.3e-39 160.2
Cmo10g00642 CCT 47 227 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 1.7e-38 157.9
Cmo11g00596 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 71.3 2.2e-38 157.5
Cmo06g01390 CST 27 360 Leucine-rich Repeat extension Gene Families AT5G25550 65.6 1.8e-37 154.5
Cmo01g01932 . 31 291 Leucine-rich Repeat extension Gene Families AT5G25550 53.6 7.0e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28