Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g01999 ATGGCTTCGTTCCCGTTCCCGTTCTTGTTCTCGTCCTCGTCCCTGTCCTCCAAAGCTTTGTTCTTGTTACTCCTTCATTTGTCTTGTCTGTTTAAGAGCTTGAGCGCCAAACATGGTGTCGTAGTCACTCATAATGACCACCACCACCACCACCATGCTCGATCACCGAGCACGAACCCGAGACTCCACCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAGGTCATTTACTCTGACCCAAAAAACCATACTACCAATTGGGTAGGGCCTTCAGTTTGCAGCTACTTTGGAGTATACTGTGCCCCATCTCTCAACGACTCAAATGTTCAGGTTGTCGCCGGAATCGACTTAAACCACGGCGACATTGCTGGATTCCTTCCTAATGAATTAGGCCTTTTAAAAGACCTTTCTCTGCTCCATCTCAACAGCAACCGATTCTGCGGCGTTTTGCCTCAATCTTTAGCCAATTTGTCTCTCCTCTTCGAATTAGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCATCTTCCAAACTTAACATATCTCGACCTTCGATTCAACGAATTTGAAGGCCAAATTCCCCCTGAACTCTTCAACAAAAGCCTCGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATAATCCCTCGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACGAGTTTATCAGGCTGTTTGCCCCAAGAAATTGGGTTCTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAATGAATTAATGGGTCCTTTGCCGTATAGTTTAGCTGGGTTGGGTCAATTGGAGCAATTGAATTTGGCTCACAATTTGTTTACTGGGAATTTGTTTGAAGGGCTTTGTAACCTTCCGAATTTGGAGAATGTGACGGTTTCGTATAATTACTTTTGTGAGGAAGAAGGGGTTTGCCGGAATTTGACGGCGGAAGGGGTTGCTTTTGACGATCGTCGGAATTGTGTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGTGGCGGTGGTTATGGTTCAAGTATTGCGGCGGCTCCGGCTTCGGCGCCTATTTCTGCAACTTCTTCCGTTGTTGCCCCTGCCCACTTGTGA 1254 45.85 MASFPFPFLFSSSSLSSKALFLLLLHLSCLFKSLSAKHGVVVTHNDHHHHHHARSPSTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCSYFGVYCAPSLNDSNVQVVAGIDLNHGDIAGFLPNELGLLKDLSLLHLNSNRFCGVLPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPNLTYLDLRFNEFEGQIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELMGPLPYSLAGLGQLEQLNLAHNLFTGNLFEGLCNLPNLENVTVSYNYFCEEEGVCRNLTAEGVAFDDRRNCVPEKPLQRSKKECSAVVERPVDCFEHPCGGGYGSSIAAAPASAPISATSSVVAPAHL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13687292 13688545 + CmoCh11G019990.1 Cmo11g01999 392618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g01999 417 Pfam Leucine rich repeat N-terminal domain 65 100 IPR013210 -
Cmo11g01999 417 Gene3D Ribonuclease Inhibitor 65 231 IPR032675 -
Cmo11g01999 417 SMART LRR_typ_2 133 156 IPR003591 -
Cmo11g01999 417 SMART LRR_typ_2 300 320 IPR003591 -
Cmo11g01999 417 SMART LRR_typ_2 181 205 IPR003591 -
Cmo11g01999 417 SMART LRR_typ_2 276 299 IPR003591 -
Cmo11g01999 417 Gene3D Ribonuclease Inhibitor 232 352 IPR032675 -
Cmo11g01999 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 18 412 - -
Cmo11g01999 417 PANTHER EXTENSIN-LIKE PROTEIN 18 412 - -
Cmo11g01999 417 Pfam Leucine rich repeat 136 193 IPR001611 GO:0005515
Cmo11g01999 417 SUPERFAMILY L domain-like 65 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01999 Cmo-Chr11:13687292 Cmo14g01778 Cmo-Chr14:13715371 3.30E-124 dispersed
Cmo11g01999 Cmo-Chr11:13687292 Cmo12g01271 Cmo-Chr12:11268328 9.01E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g01999 - - cmos:111437069 737.643