Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02005 ATGAAATCCAGTGCCGCCGCCGAGATTGTTCCGGTCCAAGGTGGCCATATCATCCGCTCCACCGCCCGGAAAGACCGCCATAGCAAGGTCTTCACCTCCAAAGGCCCTCGCGACCGCCGGGTCAGATTGTCGGCTCACACCGCCATCCGATTCTACGACGTGCAAGACCAGTTGGGTTATGATCGGCCCAGCAAAGCCGTCGATTGGCTAATCAAGAAGGCGAAATTCGCCATTGACAAGCTTCGAGAGCTTCCTCCTTATTCCCCTATTGCCAATGGCTTCGCTGACCCAAATCAGAAAACCGGGGAAACGGAAACAGAGTCCTCTGAGTTACAATCCGCCGTCGGACACTTTGCTCCGTCGCTTGAACCATTCTTTCCGACGACCTCTGCCACCACTTCCATCAATTTCCAGGGCTATCCGGTGGATTTGATTCTGACACCCACTGACCCACCTCGAGATCTCGCCCTATCTCTCCATAATTTTCACGAGTCACGCTTAATTCCGTCGGAGCAAAATGCAAACTCTTCGCCGGGAAATTACCAACGGCTCATCGGTGATTCGATTCCGGCAGGATACGAAGGAGGCGACGCCGGGCTGTGGCTGCAGCAACCATTGATGGGGCAAAATTCAACGGCGGCGTTTTCCCAGGTTCAGATGCATGGTTGGAGCGATCAGATTCGTCAGTCGGCGGGGCACGGCGGCCGATTACAGGGCCCATCGGAGTTCTGTACGCCGTCACGGATTCGAGGTGAAGGTGTGGAAGACGGCGTCGTTTTGGGGAGTCATTCGTCGTCTCCGAATTATCACCGGTAG 816 55.39 MKSSAAAEIVPVQGGHIIRSTARKDRHSKVFTSKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKAKFAIDKLRELPPYSPIANGFADPNQKTGETETESSELQSAVGHFAPSLEPFFPTTSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDSIPAGYEGGDAGLWLQQPLMGQNSTAAFSQVQMHGWSDQIRQSAGHGGRLQGPSEFCTPSRIRGEGVEDGVVLGSHSSSPNYHR 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13713710 13714525 + CmoCh11G020050.1 Cmo11g02005 392624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02005 271 MobiDBLite consensus disorder prediction 89 108 - -
Cmo11g02005 271 Pfam TCP family transcription factor 22 110 IPR017887 -
Cmo11g02005 271 MobiDBLite consensus disorder prediction 94 108 - -
Cmo11g02005 271 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 120 225 IPR005333 GO:0003700
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 110 IPR005333 GO:0003700
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4 120 225 - -
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4 4 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01290 Cmo-Chr1:10264659 Cmo11g02005 Cmo-Chr11:13713710 1.19E-42 dispersed
Cmo09g00822 Cmo-Chr9:4226655 Cmo11g02005 Cmo-Chr11:13713710 1.78E-38 dispersed
Cmo11g02005 Cmo-Chr11:13713710 Cmo07g00094 Cmo-Chr7:565129 2.51E-22 dispersed
Cmo11g02005 Cmo-Chr11:13713710 Cmo02g00070 Cmo-Chr2:363620 7.93E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10677 PF03634 TCP 9.30E-31 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02005 - - cmax:111486387 531.176