Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02005 ATGAAATCCAGTGCCGCCGCCGAGATTGTTCCGGTCCAAGGTGGCCATATCATCCGCTCCACCGCCCGGAAAGACCGCCATAGCAAGGTCTTCACCTCCAAAGGCCCTCGCGACCGCCGGGTCAGATTGTCGGCTCACACCGCCATCCGATTCTACGACGTGCAAGACCAGTTGGGTTATGATCGGCCCAGCAAAGCCGTCGATTGGCTAATCAAGAAGGCGAAATTCGCCATTGACAAGCTTCGAGAGCTTCCTCCTTATTCCCCTATTGCCAATGGCTTCGCTGACCCAAATCAGAAAACCGGGGAAACGGAAACAGAGTCCTCTGAGTTACAATCCGCCGTCGGACACTTTGCTCCGTCGCTTGAACCATTCTTTCCGACGACCTCTGCCACCACTTCCATCAATTTCCAGGGCTATCCGGTGGATTTGATTCTGACACCCACTGACCCACCTCGAGATCTCGCCCTATCTCTCCATAATTTTCACGAGTCACGCTTAATTCCGTCGGAGCAAAATGCAAACTCTTCGCCGGGAAATTACCAACGGCTCATCGGTGATTCGATTCCGGCAGGATACGAAGGAGGCGACGCCGGGCTGTGGCTGCAGCAACCATTGATGGGGCAAAATTCAACGGCGGCGTTTTCCCAGGTTCAGATGCATGGTTGGAGCGATCAGATTCGTCAGTCGGCGGGGCACGGCGGCCGATTACAGGGCCCATCGGAGTTCTGTACGCCGTCACGGATTCGAGGTGAAGGTGTGGAAGACGGCGTCGTTTTGGGGAGTCATTCGTCGTCTCCGAATTATCACCGGTAG 816 55.39 MKSSAAAEIVPVQGGHIIRSTARKDRHSKVFTSKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKAKFAIDKLRELPPYSPIANGFADPNQKTGETETESSELQSAVGHFAPSLEPFFPTTSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDSIPAGYEGGDAGLWLQQPLMGQNSTAAFSQVQMHGWSDQIRQSAGHGGRLQGPSEFCTPSRIRGEGVEDGVVLGSHSSSPNYHR 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13713710 13714525 + CmoCh11G020050.1 Cmo11g02005 392624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02005 271 MobiDBLite consensus disorder prediction 89 108 - -
Cmo11g02005 271 Pfam TCP family transcription factor 22 110 IPR017887 -
Cmo11g02005 271 MobiDBLite consensus disorder prediction 94 108 - -
Cmo11g02005 271 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 120 225 IPR005333 GO:0003700
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 110 IPR005333 GO:0003700
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4 120 225 - -
Cmo11g02005 271 PANTHER TRANSCRIPTION FACTOR TCP4 4 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02005 - - - cmax:111486387 531.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01290 Cmo-Chr1:10264659 Cmo11g02005 Cmo-Chr11:13713710 1.19E-42 dispersed
Cmo09g00822 Cmo-Chr9:4226655 Cmo11g02005 Cmo-Chr11:13713710 1.78E-38 dispersed
Cmo11g02005 Cmo-Chr11:13713710 Cmo07g00094 Cmo-Chr7:565129 2.51E-22 dispersed
Cmo11g02005 Cmo-Chr11:13713710 Cmo02g00070 Cmo-Chr2:363620 7.93E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00816 . 31 253 TCP Transcription Factor Family AT5G23280 62.2 1.3e-64 243.8
Cmo04g02347 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 3.0e-64 242.7
Cmo04g01331 . 145 359 TCP Transcription Factor Family AT5G23280 61.4 1.1e-63 240.7
Cmo18g00812 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 1.2e-57 220.7
Cmo17g00006 . 65 341 TCP Transcription Factor Family AT2G45680 50.5 5.0e-57 219.2
Cmo18g01183 CST 56 146 TCP Transcription Factor Family AT3G47620 92.3 5.3e-41 166.4
Cmo04g01729 CST 59 153 TCP Transcription Factor Family AT3G47620 88.7 5.8e-40 162.9
Cmo13g01176 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.8e-39 160.2
Cmo04g01953 . 130 212 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cmo04g01953 . 130 222 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cmo14g00744 . 1 313 TCP Transcription Factor Family AT3G27010 55.3 1.7e-61 233.8
Cmo11g01602 . 29 272 TCP Transcription Factor Family AT3G27010 55.5 4.5e-54 209.1
Cmo17g01372 . 269 486 TCP Transcription Factor Family AT3G27010 53.2 6.4e-48 188.7
Cmo15g00816 . 1 252 TCP Transcription Factor Family AT5G08330 60.2 9.7e-65 244.2
Cmo04g02347 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 9.1e-63 237.7
Cmo04g01331 . 117 357 TCP Transcription Factor Family AT5G08330 55.2 1.5e-60 230.3
Cmo18g00812 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 2.3e-58 223.0
Cmo11g00214 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 56.7 2.3e-38 157.1
Cmo14g01189 . 28 139 TCP Transcription Factor Family AT3G02150 66.4 2.6e-37 153.7
Cmo11g02005 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10677 PF03634 TCP 9.30E-31 No_clan Cmo TF