Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02016 ATGCCACTCGATCACCACTCCCAACACTTCGACCAAACACGCAGTTCCGTCGAAGCCGATGATGATTCCCACCATCTCCACCCTACTCGTTCCACGACGTCTGTCGTCAATGGAGCCGACTGCGAGAATGCCGGCGATGACCTTTTCGTCCCTCCCCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTACTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAGCATGGATTTTCTCAAGTTGAATGGAATTCGATTGTTTCAACTCGGGATTGAAGGTACTAAGGAGCCTTTTGTGAACATTCCAGACAACACAATTCGTGAAGCACTTAAAATTATTCTCGATGTGAGGAATCGCCCAGTTCTAATCCATTGCAAACGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCCTCAGTCTTTTATGAGTATCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGATGTTTCTGGCTTGAAGTATCTGCCATCTTCATTTTCTTGTTCCAAAAGATAA 636 47.48 MPLDHHSQHFDQTRSSVEADDDSHHLHPTRSTTSVVNGADCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFYFLQTLGLRSIICLCPEPYPEASMDFLKLNGIRLFQLGIEGTKEPFVNIPDNTIREALKIILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFYEYQRFAAAKARVSDQRFIELFDVSGLKYLPSSFSCSKR 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13756868 13759958 - CmoCh11G020160.1 Cmo11g02016 392635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02016 211 Gene3D Protein tyrosine phosphatase superfamily 48 198 IPR029021 -
Cmo11g02016 211 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Cmo11g02016 211 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Cmo11g02016 211 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Cmo11g02016 211 PRINTS Plant and fungal dual specificity phosphatase signature 122 136 IPR020428 GO:0016791
Cmo11g02016 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Cmo11g02016 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 19 210 - -
Cmo11g02016 211 MobiDBLite consensus disorder prediction 1 37 - -
Cmo11g02016 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 208 IPR020422 GO:0006470|GO:0008138
Cmo11g02016 211 CDD PFA-DSP_Siw14 48 195 - -
Cmo11g02016 211 MobiDBLite consensus disorder prediction 1 28 - -
Cmo11g02016 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 195 IPR029021 -
Cmo11g02016 211 Pfam Tyrosine phosphatase family 50 197 IPR004861 -
Cmo11g02016 211 PANTHER - 19 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02016 Cmo-Chr11:13756868 Cmo19g01077 Cmo-Chr19:9285905 5.96E-125 wgd
Cmo11g02016 Cmo-Chr11:13756868 Cmo02g00063 Cmo-Chr2:325814 9.86E-65 wgd
Cmo11g02016 Cmo-Chr11:13756868 Cmo20g00254 Cmo-Chr20:1227643 1.27E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02016 K18045 - csv:101209768 350.903