Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02021 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGAGTTTGTGGCCACTATCACAAATACGAAGAAGGGGAAGTCTGTGGGATATGTGGTCATCGTGTTCCCGCTACATCCGAGAAAACTTCCTTGCAAGTTAGTGCGTTTCCTTCAGAGATCTTGCCAGAGTTTCTCTATTTGGGAAGTTATGACAACGCTTCACGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATACGACAAGACGTTACCATTTGATGACGCTGTTGAATTTCTAGATTACTATCTGCTGAATGAATGGCTTTCGGTTAAGACCATGACTAGCTTTCTGTCATTCACTGAGAGAAATCAATGTGAACGAGATAAGGCTCGTGTTTTGGTGCACTGCATGTCGGGAAAAAACAGGTTCTCTCCCCTATTCATTGATAAAACTGGAACTCTGAAACTATTTATGTACCCGATTAAACTTATTGATCATAGGTCTCCAGCTATTGTAATCGCGTTCTTGATGAAATGCAAAGGATGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCTGTTGACTTAACTGAGCCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCAACCGAAAACGCCCTCCCAACCTTACCAATCTTCCCTCCTGTTGGTCTGCCTTCTTTTAGCTTCGGCTTCCCAAAGACCTGCGACCCAGTTCCCACAACTCCATTCAACACCATTGGTGCAACATCTATCTTCTCCGCCCCCAACATAGACTTACCTTCTCACGAGTTCACGTTTGGCGCTGGCCAGACTCAAACTAGTTTCTCCGCAAGCCCCTTCGGCGCAAATCCAAGAAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA 963 45.28 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLDYYLLNEWLSVKTMTSFLSFTERNQCERDKARVLVHCMSGKNRFSPLFIDKTGTLKLFMYPIKLIDHRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPIYQQLQEYEQKVFGSTENALPTLPIFPPVGLPSFSFGFPKTCDPVPTTPFNTIGATSIFSAPNIDLPSHEFTFGAGQTQTSFSASPFGANPRNSTSSNIQMDSA 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13784088 13786538 - CmoCh11G020210.1 Cmo11g02021 392640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02021 320 SMART dsp_5 46 227 IPR020422 GO:0006470|GO:0008138
Cmo11g02021 320 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 136 161 - -
Cmo11g02021 320 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 179 230 IPR029021 -
Cmo11g02021 320 MobiDBLite consensus disorder prediction 298 320 - -
Cmo11g02021 320 Gene3D Protein tyrosine phosphatase superfamily 30 232 IPR029021 -
Cmo11g02021 320 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 177 319 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Cmo11g02021 320 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 155 IPR029021 -
Cmo11g02021 320 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 113 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Cmo11g02021 320 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 136 161 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Cmo11g02021 320 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 113 - -
Cmo11g02021 320 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 177 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02021 Cmo-Chr11:13784088 Cmo08g01140 Cmo-Chr8:7275567 1.49E-07 dispersed
Cmo11g02021 Cmo-Chr11:13784088 Cmo19g01082 Cmo-Chr19:9311595 3.13E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02021 K04459 - csv:101211000 497.278