Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02028 ATGCTATCCACTCTGCAGCCTCCTCGCTGTTCCCTTTCTCGCTTCCCTCTCCATCTTCCTTCTAAACCCTTCTTCTTTCACTCCAAACCAACCCCGCTCTCATCTCCATATCCCATCGCCAATGCCACTCTCACCGACCAAATTGCAACTTCCGCTTCATCCCCATCTCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTTCTTTCCCGCCAATTCACTGCCACCCAACTTGCCGAGTCCTATCTCAATCGCCTTCGAGCATTGGAGCCTCACCTTAAGTCATTTCTCCACGTCTCTGATAGCGTTCTCTCCGATGCCCGCGAGATTGATGACAAAATTCTGAGAAATGAGGAATTGGGTCCTTTGGCTGGGGTGCTTGTCGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTAGGATTCTCGATGGGTATCGACCGCCATTTGATGCTACTGCTGTGAGGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAGTTTGGAATGGGTAGTACTACTGAAGCCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAAAAGGGTCCCGGGAGGATCATCAGGAGGCTCCGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCTTTAGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCGTCTTTTTGCGGTGTTGTTGGGTTGAAACCAACGTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTCATTGGCTGCTTGGGGACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCATGATACACTTGACGCCACCAGCAGTAAACGAGAAGTTCATGATTTCACGTCGCAATTTACTGCTGCTGATTCATTGGAAAGTAAACCCTTGAAGGGATTGAGGATTGGCCTAATTCGTGAAACTCTTGATAATGGTGTTGATGGTGAAGTAAGTTCTGCAATACGTGCTGCTGCTTCACATCTTGAAGAACTGGGATGCTCCATCAATGAGGTATCACTGCCATCATTCTCTCTTGGGCTGCCTGCCTATTACATTCTTGCATCATCTGAATCATCTTCAAACTTAGCACGATATGACGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGCTAACTGGCCTGTATCAAAATTCCAGAGCAACAGGATTTGGTTCGGAGGTGAAAATGAGAATTTTGATGGGAACATACGCTCTCTCTGCTGGTTATTACGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAAGCGTTATTCAGAAAAGCTTCAAGGCAGCATTAGATGAAAATGACATCTTAATATCACCCGCTGCTCCATCTGCCGCTTATAAAATTGGCGAAAAGGTGAAGGATCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTAGGTGGACTACCTGCATTGGTGTTGCCTTGTGGATTTGTTAGAGATGGGTCCTCCGACCTCCCTGTCGGCCTTCAAATGATTGGCGCAGCGTTTGACGAGGGAAAGCTTGTTAAAGTGGGACACATCTTTGAGCAAACTCTTCCAGACTGCAGATTTGTTCCACCTCTACTAGCTGATCACATTGGGGATCGCTGTCCCGTCGGAATCTCGGTCGATCCATTGTTCCGATCTATTCCATCTGTTCGGCGTCGAATCTCCGCTGCTTACGTACTCCTCCGACACCAGATATTGAAAAAGATGTCGGGCCAGACCCAACGTTTGAATGTGGTTCCGACGGTTACAATGCTTGGAGCGATGAAAGCCCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTTTGACTGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCTCAGCTAAGGAATCAATGGGGGAAGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTTCTTGAGAATGTCCAAAGTGCCGCTATTAAGATTCGATCTCGGCAGGAGAATATTGCTGGTGTAAAACTCCCAAAATTTGAACATTATTCTGATGGTGAGACCAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTGAAGGCAATTGAGGTTCTTGTAGAGCTTGCTTCACTTCAGACATCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTTAATGCTCTGGAGAATGTTGTGAAGCCAAGGATTGAGAATACTATAAGTTACATTAAGGGAGAATTGGATGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTATAAGAGAAGGGAAATTGAGAGGCAACGTATCAATGCCAAGCTATATGCTGAGGAACAACTTGCTGAAAAGATATCCTTGCAGAAGGGCGTTTCCATGACTTTAGCCCACAACTTATTGTCTGCAGCTGCTGAGAAGGACGAGGATATTATTTTTTGA 2556 46.4 MLSTLQPPRCSLSRFPLHLPSKPFFFHSKPTPLSSPYPIANATLTDQIATSASSPSLHSQILSIRHSLLSRQFTATQLAESYLNRLRALEPHLKSFLHVSDSVLSDAREIDDKILRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVRRIKELGGIVVGKTNLDEFGMGSTTEASAFQVTANPWDLKRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLGTTVADAGILLHAISGHDTLDATSSKREVHDFTSQFTAADSLESKPLKGLRIGLIRETLDNGVDGEVSSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYQNSRATGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRSVIQKSFKAALDENDILISPAAPSAAYKIGEKVKDPLAMYAGDIMTVNVNLGGLPALVLPCGFVRDGSSDLPVGLQMIGAAFDEGKLVKVGHIFEQTLPDCRFVPPLLADHIGDRCPVGISVDPLFRSIPSVRRRISAAYVLLRHQILKKMSGQTQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGEVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRINAKLYAEEQLAEKISLQKGVSMTLAHNLLSAAAEKDEDIIF 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13824794 13830939 + CmoCh11G020280.1 Cmo11g02028 392647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02028 851 TIGRFAM gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 66 537 IPR004412 GO:0006412|GO:0030956|GO:0050567
Cmo11g02028 851 SUPERFAMILY Amidase signature (AS) enzymes 60 546 IPR036928 -
Cmo11g02028 851 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 64 539 IPR004412 GO:0006412|GO:0030956|GO:0050567
Cmo11g02028 851 PANTHER TRANSAMIDASE 59 535 IPR000120 GO:0003824
Cmo11g02028 851 Pfam Amidase 78 527 IPR023631 -
Cmo11g02028 851 Gene3D Amidase signature (AS) domain 58 540 IPR036928 -
Cmo11g02028 851 Pfam ATP synthase subunit D 607 798 IPR002699 GO:0046961
Cmo11g02028 851 Gene3D - 590 788 - -
Cmo11g02028 851 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL 59 535 - -
Cmo11g02028 851 ProSitePatterns Amidases signature. 204 235 IPR020556 -
Cmo11g02028 851 TIGRFAM V_ATPase_subD: V-type ATPase, D subunit 599 801 IPR002699 GO:0046961
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01729 Cmo-Chr11:12227119 Cmo11g02028 Cmo-Chr11:13824794 3.39E-31 dispersed
Cmo11g02028 Cmo-Chr11:13824794 Cmo19g00514 Cmo-Chr19:6067275 1.65E-42 dispersed
Cmo02g00588 Cmo-Chr2:3501711 Cmo11g02028 Cmo-Chr11:13824794 7.27E-177 transposed
Cmo11g02028 Cmo-Chr11:13824794 Cmo19g01088 Cmo-Chr19:9355597 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02028 K02433 - csv:101212627 974.926