Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g02028 | ATGCTATCCACTCTGCAGCCTCCTCGCTGTTCCCTTTCTCGCTTCCCTCTCCATCTTCCTTCTAAACCCTTCTTCTTTCACTCCAAACCAACCCCGCTCTCATCTCCATATCCCATCGCCAATGCCACTCTCACCGACCAAATTGCAACTTCCGCTTCATCCCCATCTCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTTCTTTCCCGCCAATTCACTGCCACCCAACTTGCCGAGTCCTATCTCAATCGCCTTCGAGCATTGGAGCCTCACCTTAAGTCATTTCTCCACGTCTCTGATAGCGTTCTCTCCGATGCCCGCGAGATTGATGACAAAATTCTGAGAAATGAGGAATTGGGTCCTTTGGCTGGGGTGCTTGTCGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTAGGATTCTCGATGGGTATCGACCGCCATTTGATGCTACTGCTGTGAGGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAGTTTGGAATGGGTAGTACTACTGAAGCCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAAAAGGGTCCCGGGAGGATCATCAGGAGGCTCCGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCTTTAGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCGTCTTTTTGCGGTGTTGTTGGGTTGAAACCAACGTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTCATTGGCTGCTTGGGGACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCATGATACACTTGACGCCACCAGCAGTAAACGAGAAGTTCATGATTTCACGTCGCAATTTACTGCTGCTGATTCATTGGAAAGTAAACCCTTGAAGGGATTGAGGATTGGCCTAATTCGTGAAACTCTTGATAATGGTGTTGATGGTGAAGTAAGTTCTGCAATACGTGCTGCTGCTTCACATCTTGAAGAACTGGGATGCTCCATCAATGAGGTATCACTGCCATCATTCTCTCTTGGGCTGCCTGCCTATTACATTCTTGCATCATCTGAATCATCTTCAAACTTAGCACGATATGACGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGCTAACTGGCCTGTATCAAAATTCCAGAGCAACAGGATTTGGTTCGGAGGTGAAAATGAGAATTTTGATGGGAACATACGCTCTCTCTGCTGGTTATTACGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAAGCGTTATTCAGAAAAGCTTCAAGGCAGCATTAGATGAAAATGACATCTTAATATCACCCGCTGCTCCATCTGCCGCTTATAAAATTGGCGAAAAGGTGAAGGATCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTAGGTGGACTACCTGCATTGGTGTTGCCTTGTGGATTTGTTAGAGATGGGTCCTCCGACCTCCCTGTCGGCCTTCAAATGATTGGCGCAGCGTTTGACGAGGGAAAGCTTGTTAAAGTGGGACACATCTTTGAGCAAACTCTTCCAGACTGCAGATTTGTTCCACCTCTACTAGCTGATCACATTGGGGATCGCTGTCCCGTCGGAATCTCGGTCGATCCATTGTTCCGATCTATTCCATCTGTTCGGCGTCGAATCTCCGCTGCTTACGTACTCCTCCGACACCAGATATTGAAAAAGATGTCGGGCCAGACCCAACGTTTGAATGTGGTTCCGACGGTTACAATGCTTGGAGCGATGAAAGCCCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTTTGACTGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCTCAGCTAAGGAATCAATGGGGGAAGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTTCTTGAGAATGTCCAAAGTGCCGCTATTAAGATTCGATCTCGGCAGGAGAATATTGCTGGTGTAAAACTCCCAAAATTTGAACATTATTCTGATGGTGAGACCAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTGAAGGCAATTGAGGTTCTTGTAGAGCTTGCTTCACTTCAGACATCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTTAATGCTCTGGAGAATGTTGTGAAGCCAAGGATTGAGAATACTATAAGTTACATTAAGGGAGAATTGGATGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTATAAGAGAAGGGAAATTGAGAGGCAACGTATCAATGCCAAGCTATATGCTGAGGAACAACTTGCTGAAAAGATATCCTTGCAGAAGGGCGTTTCCATGACTTTAGCCCACAACTTATTGTCTGCAGCTGCTGAGAAGGACGAGGATATTATTTTTTGA | 2556 | 46.4 | MLSTLQPPRCSLSRFPLHLPSKPFFFHSKPTPLSSPYPIANATLTDQIATSASSPSLHSQILSIRHSLLSRQFTATQLAESYLNRLRALEPHLKSFLHVSDSVLSDAREIDDKILRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVRRIKELGGIVVGKTNLDEFGMGSTTEASAFQVTANPWDLKRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLGTTVADAGILLHAISGHDTLDATSSKREVHDFTSQFTAADSLESKPLKGLRIGLIRETLDNGVDGEVSSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYQNSRATGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRSVIQKSFKAALDENDILISPAAPSAAYKIGEKVKDPLAMYAGDIMTVNVNLGGLPALVLPCGFVRDGSSDLPVGLQMIGAAFDEGKLVKVGHIFEQTLPDCRFVPPLLADHIGDRCPVGISVDPLFRSIPSVRRRISAAYVLLRHQILKKMSGQTQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGEVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRINAKLYAEEQLAEKISLQKGVSMTLAHNLLSAAAEKDEDIIF | 851 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13824794 | 13830939 | + | CmoCh11G020280.1 | Cmo11g02028 | 392647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g02028 | 851 | TIGRFAM | gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit | 66 | 537 | IPR004412 | GO:0006412|GO:0030956|GO:0050567 | |
Cmo11g02028 | 851 | SUPERFAMILY | Amidase signature (AS) enzymes | 60 | 546 | IPR036928 | - | |
Cmo11g02028 | 851 | Hamap | Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. | 64 | 539 | IPR004412 | GO:0006412|GO:0030956|GO:0050567 | |
Cmo11g02028 | 851 | PANTHER | TRANSAMIDASE | 59 | 535 | IPR000120 | GO:0003824 | |
Cmo11g02028 | 851 | Pfam | Amidase | 78 | 527 | IPR023631 | - | |
Cmo11g02028 | 851 | Gene3D | Amidase signature (AS) domain | 58 | 540 | IPR036928 | - | |
Cmo11g02028 | 851 | Pfam | ATP synthase subunit D | 607 | 798 | IPR002699 | GO:0046961 | |
Cmo11g02028 | 851 | Gene3D | - | 590 | 788 | - | - | |
Cmo11g02028 | 851 | PANTHER | GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL | 59 | 535 | - | - | |
Cmo11g02028 | 851 | ProSitePatterns | Amidases signature. | 204 | 235 | IPR020556 | - | |
Cmo11g02028 | 851 | TIGRFAM | V_ATPase_subD: V-type ATPase, D subunit | 599 | 801 | IPR002699 | GO:0046961 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01729 | Cmo-Chr11:12227119 | Cmo11g02028 | Cmo-Chr11:13824794 | 3.39E-31 | dispersed | |
Cmo11g02028 | Cmo-Chr11:13824794 | Cmo19g00514 | Cmo-Chr19:6067275 | 1.65E-42 | dispersed | |
Cmo02g00588 | Cmo-Chr2:3501711 | Cmo11g02028 | Cmo-Chr11:13824794 | 7.27E-177 | transposed | |
Cmo11g02028 | Cmo-Chr11:13824794 | Cmo19g01088 | Cmo-Chr19:9355597 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g02028 | K02433 | - | csv:101212627 | 974.926 |