Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02038 ATGCAGACCAATCACCGTAAGAAGGATTCTGCAGAGTTGGACTTTTTCTCTGAATATGGCGATGCTAACAGATTCAAAATTCAGGAAGTTGTTGGGAAGGGGAGTTATGGAGTGGTTTGTTCAGCTGTCGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATAAATGATATTTTTGAACACCTATCGGATGCTGCTCGTATTCTTCGTGAGATAAAGCTGCTCAGACTTCTACGTCATCCCGATATTGTTGAAATCAAACACATTATGCTACCGCCTTCTCGTAGGGGGTTCAAAGATATCTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTGATCAAGGCTAATGATGATTTAACAACAAAGCACTATCAATTTTTCCTTTATCAGCTACTCCGTGCACTAAAATATATTCACGCAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATATGTGATTTTGGATTGGCTAGAGTTGCTTTCAGTGACACCCCGACAACAATATTTTGGACGGACTATGTTGCTACCAGATGGTATAGAGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTAACTGGAAAACCAATTTTTCCCGGTAAAAATGTTGTTCATCAGCTTGATCTGATGACAGATCTCCTTGGAACGCCTTCATTAGATACCATTTCTCGGGTAAGAAATGAGAAGGCTAGAAGGTACTTAGCTAGTATGAGGAAGAAGCAGCCCATTCCGTTTTCACAGAAGTTCCCAAATGCGGATCCTCTAGCCCTGCAATTACTACAACGATTGCTTGCGTTTGATCCAAAGGATCGACCTACTGCAGAAGAGGCATTGGCAGATCCTTACTTTAAAGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAGAGGAGAAAGGTCACAAAGGACGACATTCGCGAGCTGATATTCCGGGAGATACTAGAATACCATCCTCAACTGCTGAAAGACTACTTAAATGGAACTGAGAGAGCAAATTTTCTTTATCCAAGTGCACTCGATCAGTTCAAAAAACAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGCTTATCCTCTAGAAAGAAAGCATGCATCTCTTCCTAGGTCTTCGGTTCAGTCGAATACCATTCCTCCTAAAGCAACATCGAATGTTGCTTCTTTTAAAGACCGATATGTGCCACCAGGGGCGTACAGCAACCGGCATTACAGAGATCCAGCTGCACAGAGGATTGCTGCAACTCAAGGTGAGCCTGGAAGAATATCAGGCCCGGTCATGCCATATGATAGTGGAAGTATCGCCAAGGATGCCTATGATCCAAGAAGGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCAACATATTATTACCAGCAATCTTGCGGCAAAAGTGAAGAATCATCAACAACAGGGGCTGAGAAAGACACTTCCTTGCAATGCAAACAAGCCCCTCAATGCGGAATGGCAGCCAAATTAACATCCGACACAGCAGCTACTGGTGCTTTCTCAAATCCTTTTTTTATGGCACGTGTAGGATTGCACAAGGCGGGAAACAATGACCGTGCTGCACGTGTGCAGGTAAACACTCAATATGACACTGGAGCCGTTCCAGCTGCAACTGCCACCACCCATAGAAACACTGGCATGGTCGAGTACGGTATGACAAGAATTTTGAAGCAACTTCATGTAGATAAGATGAATGCCATTTTATCCACGAAACTCGTTTGTCTCAATGGCAGGGTCCATGCTTGTAGTTGCCAGAGTTTTGTAGTAGGGAAGAAAAGCATGATTATGTTCGTTTATTGGATCTCAAACCTCAAAACTTACCATCACCATATTGAATTGGCCATTGAAGAGGAAGCTGAGCTTTTACTAACTTAG 2022 42.53 MQTNHRKKDSAELDFFSEYGDANRFKIQEVVGKGSYGVVCSAVDTLTNEKVAIKKINDIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTTKHYQFFLYQLLRALKYIHAANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPIFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLASMRKKQPIPFSQKFPNADPLALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFREILEYHPQLLKDYLNGTERANFLYPSALDQFKKQFAHLEDNGGKSGPAYPLERKHASLPRSSVQSNTIPPKATSNVASFKDRYVPPGAYSNRHYRDPAAQRIAATQGEPGRISGPVMPYDSGSIAKDAYDPRRLIRSALPSHAIHPTYYYQQSCGKSEESSTTGAEKDTSLQCKQAPQCGMAAKLTSDTAATGAFSNPFFMARVGLHKAGNNDRAARVQVNTQYDTGAVPAATATTHRNTGMVEYGMTRILKQLHVDKMNAILSTKLVCLNGRVHACSCQSFVVGKKSMIMFVYWISNLKTYHHHIELAIEEEAELLLT 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13860920 13864748 - CmoCh11G020380.1 Cmo11g02038 392657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02038 673 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo11g02038 673 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 488 - -
Cmo11g02038 673 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g02038 673 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g02038 673 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Cmo11g02038 673 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 488 - -
Cmo11g02038 673 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cmo11g02038 673 Pfam Protein kinase domain 26 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g02038 673 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Cmo11g02038 673 MobiDBLite consensus disorder prediction 412 428 - -
Cmo11g02038 673 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cmo11g02038 673 MobiDBLite consensus disorder prediction 396 433 - -
Cmo11g02038 673 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02038 Cmo-Chr11:13860920 Cmo17g00265 Cmo-Chr17:1582906 0 dispersed
Cmo16g00481 Cmo-Chr16:2304256 Cmo11g02038 Cmo-Chr11:13860920 1.34E-116 dispersed
Cmo16g00482 Cmo-Chr16:2306493 Cmo11g02038 Cmo-Chr11:13860920 1.59E-104 dispersed
Cmo11g00666 Cmo-Chr11:3203763 Cmo11g02038 Cmo-Chr11:13860920 8.29E-10 transposed
Cmo11g02038 Cmo-Chr11:13860920 Cmo19g01097 Cmo-Chr19:9403201 0 wgd
Cmo11g02038 Cmo-Chr11:13860920 Cmo02g00040 Cmo-Chr2:218307 0 wgd
Cmo11g02038 Cmo-Chr11:13860920 Cmo20g00282 Cmo-Chr20:1368617 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74704 PF00069 Pkinase 2.70E-66 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02038 - - csv:101214068 1091.64