Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g02044 | ATGGCGAATGATGAAGGGGAAAATAAGGAGTACCAGCAGTATGATCCATTTGTTTACAACCAGCTGGATATGAACCGTACCATCCTCCAGCAACAGCCGTCGTTGGATCCTGCTTTCATGAGCTTCACCAACTTCATGGACACGTCGTTAGAGTACAACAGCGTGTGGAGGGCGTTGGACGTGTCCTGCTCTTCATCGGAACTCATTTCTCCGGTGGACGACATGTCCAAAAAGAAGGCTTCAAATGCTTCAGTGTCGTCTTCATCTGATGAGGCTGCACCTGCAGCTGAAGACGATTCCGTGAAGAGCAAGAAAGAAGAGAAGCGTAAGAAACAGAACGCAGCCCAAAAGAAAGAGAAGCGAGAGAGGGAGCCCCGGTTTGCTTTCTTGACCAAGAGTGAGATTGATCAGCTTGAAGATGGATATAGGTGGAGAAAATATGGACAGAAGGCAGTCAAAAACAGTCCTTACCCCAGAAGTTACTACAGATGCACCAGTCAAAAATGCGTAGTGAAGAAACGAGTAGAAAGATCATACCAAGATCCATCCCTGGTCATAACTACGTATGAAGGCCAACACATCCACCATTGCCCGGCTACACTCCGAGGCCATTCGTCTCCGTTTTACGCATCGGCATCGACGTCGACATTGGCAACGGCACCCTCCTCGGGACCTGCCCTTCCCCAACAACTCTTCTCGCATTTGCTATCAAAGAACTGCCAGACCGATCCCACGTCAATGATGTACCAAAATCTAAACCTCCAGCAACATCTTCAAATGCCGGATCATCATAGTCTGTTGCAGGATTTGTTCACTCAAAAATAG | 825 | 48.0 | MANDEGENKEYQQYDPFVYNQLDMNRTILQQQPSLDPAFMSFTNFMDTSLEYNSVWRALDVSCSSSELISPVDDMSKKKASNASVSSSSDEAAPAAEDDSVKSKKEEKRKKQNAAQKKEKREREPRFAFLTKSEIDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSLVITTYEGQHIHHCPATLRGHSSPFYASASTSTLATAPSSGPALPQQLFSHLLSKNCQTDPTSMMYQNLNLQQHLQMPDHHSLLQDLFTQK | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13877109 | 13878330 | + | CmoCh11G020440.1 | Cmo11g02044 | 392663 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g02044 | 274 | MobiDBLite | consensus disorder prediction | 95 | 125 | - | - | |
Cmo11g02044 | 274 | SUPERFAMILY | WRKY DNA-binding domain | 131 | 198 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g02044 | 274 | Gene3D | WRKY domain | 122 | 199 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g02044 | 274 | MobiDBLite | consensus disorder prediction | 73 | 125 | - | - | |
Cmo11g02044 | 274 | MobiDBLite | consensus disorder prediction | 73 | 93 | - | - | |
Cmo11g02044 | 274 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 11 | 272 | IPR044810 | GO:0003700 | |
Cmo11g02044 | 274 | Coils | Coil | 101 | 124 | - | - | |
Cmo11g02044 | 274 | PANTHER | WRKY TRANSCRIPTION FACTOR 71-RELATED | 11 | 272 | - | - | |
Cmo11g02044 | 274 | Pfam | WRKY DNA -binding domain | 139 | 195 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g02044 | 274 | ProSiteProfiles | WRKY domain profile. | 133 | 198 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo11g02044 | 274 | SMART | WRKY_cls | 138 | 197 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g02044 | Cmo20g00284 | CCT | |
Cmo11g02044 | Cmo20g00284 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00431 | Cmo-Chr3:4953368 | Cmo11g02044 | Cmo-Chr11:13877109 | 2.19E-22 | dispersed | |
Cmo11g02044 | Cmo-Chr11:13877109 | Cmo17g00367 | Cmo-Chr17:2255107 | 1.23E-49 | dispersed | |
Cmo11g02044 | Cmo-Chr11:13877109 | Cmo19g01110 | Cmo-Chr19:9444514 | 2.37E-138 | wgd | |
Cmo11g02044 | Cmo-Chr11:13877109 | Cmo20g00284 | Cmo-Chr20:1380500 | 6.58E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10679 | PF03106 | WRKY | 1.40E-24 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g02044 | - | - | cmos:111437082 | 500.745 |