Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02044 ATGGCGAATGATGAAGGGGAAAATAAGGAGTACCAGCAGTATGATCCATTTGTTTACAACCAGCTGGATATGAACCGTACCATCCTCCAGCAACAGCCGTCGTTGGATCCTGCTTTCATGAGCTTCACCAACTTCATGGACACGTCGTTAGAGTACAACAGCGTGTGGAGGGCGTTGGACGTGTCCTGCTCTTCATCGGAACTCATTTCTCCGGTGGACGACATGTCCAAAAAGAAGGCTTCAAATGCTTCAGTGTCGTCTTCATCTGATGAGGCTGCACCTGCAGCTGAAGACGATTCCGTGAAGAGCAAGAAAGAAGAGAAGCGTAAGAAACAGAACGCAGCCCAAAAGAAAGAGAAGCGAGAGAGGGAGCCCCGGTTTGCTTTCTTGACCAAGAGTGAGATTGATCAGCTTGAAGATGGATATAGGTGGAGAAAATATGGACAGAAGGCAGTCAAAAACAGTCCTTACCCCAGAAGTTACTACAGATGCACCAGTCAAAAATGCGTAGTGAAGAAACGAGTAGAAAGATCATACCAAGATCCATCCCTGGTCATAACTACGTATGAAGGCCAACACATCCACCATTGCCCGGCTACACTCCGAGGCCATTCGTCTCCGTTTTACGCATCGGCATCGACGTCGACATTGGCAACGGCACCCTCCTCGGGACCTGCCCTTCCCCAACAACTCTTCTCGCATTTGCTATCAAAGAACTGCCAGACCGATCCCACGTCAATGATGTACCAAAATCTAAACCTCCAGCAACATCTTCAAATGCCGGATCATCATAGTCTGTTGCAGGATTTGTTCACTCAAAAATAG 825 48.0 MANDEGENKEYQQYDPFVYNQLDMNRTILQQQPSLDPAFMSFTNFMDTSLEYNSVWRALDVSCSSSELISPVDDMSKKKASNASVSSSSDEAAPAAEDDSVKSKKEEKRKKQNAAQKKEKREREPRFAFLTKSEIDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSLVITTYEGQHIHHCPATLRGHSSPFYASASTSTLATAPSSGPALPQQLFSHLLSKNCQTDPTSMMYQNLNLQQHLQMPDHHSLLQDLFTQK 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13877109 13878330 + CmoCh11G020440.1 Cmo11g02044 392663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02044 274 MobiDBLite consensus disorder prediction 95 125 - -
Cmo11g02044 274 SUPERFAMILY WRKY DNA-binding domain 131 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g02044 274 Gene3D WRKY domain 122 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo11g02044 274 MobiDBLite consensus disorder prediction 73 125 - -
Cmo11g02044 274 MobiDBLite consensus disorder prediction 73 93 - -
Cmo11g02044 274 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 272 IPR044810 GO:0003700
Cmo11g02044 274 Coils Coil 101 124 - -
Cmo11g02044 274 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 11 272 - -
Cmo11g02044 274 Pfam WRKY DNA -binding domain 139 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g02044 274 ProSiteProfiles WRKY domain profile. 133 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo11g02044 274 SMART WRKY_cls 138 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g02044 Cmo20g00284 CCT
Cmo11g02044 Cmo20g00284 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00431 Cmo-Chr3:4953368 Cmo11g02044 Cmo-Chr11:13877109 2.19E-22 dispersed
Cmo11g02044 Cmo-Chr11:13877109 Cmo17g00367 Cmo-Chr17:2255107 1.23E-49 dispersed
Cmo11g02044 Cmo-Chr11:13877109 Cmo19g01110 Cmo-Chr19:9444514 2.37E-138 wgd
Cmo11g02044 Cmo-Chr11:13877109 Cmo20g00284 Cmo-Chr20:1380500 6.58E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10679 PF03106 WRKY 1.40E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02044 - - cmos:111437082 500.745