Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02045 ATGTCATCTGGAAGTAGTCTGAATACAGAATTGTCAAAGAAAACATCCTTCCTTGGTTTGTCCTTATGGGTTTTGATCTGCTTGTGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATTTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCTGAAAACTTCTCTGTTTCTCAAATACCAAATGTCTCAAAGGATATCAAGGTGGACAGAATAGCGACTCAATCTGCTCACCACAATCATCTTGAGAGTCTATATCTTTCCATTAATGATAAATCTAGTGACAAGAACTCGGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGATCATGATAACATAAGCCAATGCAGCTCCAATTATCATAATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGGGTTCCATGTCATATGGAGCGTATGGAGGACTTGTAACTGCCTCTCCTCTTGTTGGCTTGCCCGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTTGAATATGCAACAAATCGTTTTTCTGCTGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAAGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAGAGAATTTAGAGTTGAAGTGGAGGCCATTGGCCATGTAAGGCACAAGAATCTTGTACGGCTTCTGGGCTACTGCATAGAAGGAGTTCATAGGATGCTGGTTTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCTATGCGCCAACATGGCACCCTTACATGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCTTATTTACATGAAGCAATTGAACCGAAGGTTGTCCATAGAGACATAAAATCAAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGGTTGGCTAAACTGTTGGATGCAGGGGAGAGTCATATCACGACTAGAGTAATGGGAACATTTGGCTATGTGGCACCAGAGTATGCAAACACGGGCTTGTTAAACGAGAAGAGTGACATTTACAGCTTCGGCGTTCTCCTTCTAGAAGCAATTACAGGAAGAGACCCTGTGGACTATGGCCGTCCTGCCAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCTGAGGAAGTCATGGACCCAAGTTTTGAAACGAAACCCGCTACTCGGGCGTTGAAACGTGGCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGAGTCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCGTCACGTGAGGATCGGAGGAGCCAAAAGAGCAGCACAGCTAATTCGGAGATTGAATCCACAAAAGAGAGCTCCGGACAAGGCGAGGTGGGAAGTAATGCATGA 1509 43.54 MSSGSSLNTELSKKTSFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSVSQIPNVSKDIKVDRIATQSAHHNHLESLYLSINDKSSDKNSEKMIGHLGMSKSSDHDNISQCSSNYHNERVFSSHSGEEGSSGTVRKQGSMSYGAYGGLVTASPLVGLPEISHLGWGHWFTLRDLEYATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVMDPSFETKPATRALKRGLLIALRCVDPEADKRPKMSQVVRMLEADDYPSREDRRSQKSSTANSEIESTKESSGQGEVGSNA 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13879578 13883807 - CmoCh11G020450.1 Cmo11g02045 392664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02045 502 MobiDBLite consensus disorder prediction 481 502 - -
Cmo11g02045 502 CDD STKc_IRAK 198 464 - -
Cmo11g02045 502 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Cmo11g02045 502 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Cmo11g02045 502 PANTHER OS01G0323000 PROTEIN 2 499 - -
Cmo11g02045 502 Pfam Protein kinase domain 194 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g02045 502 MobiDBLite consensus disorder prediction 455 502 - -
Cmo11g02045 502 PANTHER OS10G0497600 PROTEIN 2 499 - -
Cmo11g02045 502 SMART serkin_6 192 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g02045 502 Gene3D Transferase(Phosphotransferase) domain 1 268 482 - -
Cmo11g02045 502 Coils Coil 212 232 - -
Cmo11g02045 502 MobiDBLite consensus disorder prediction 455 480 - -
Cmo11g02045 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Cmo11g02045 502 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo11g02045 502 SUPERFAMILY Protein kinase-like (PK-like) 176 469 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g02045 Cmo20g00285 CCT
Cmo02g00038 Cmo11g02045 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g02045 Cmo-Chr11:13879578 Cmo17g00387 Cmo-Chr17:2404272 0 dispersed
Cmo11g02045 Cmo-Chr11:13879578 Cmo19g01111 Cmo-Chr19:9447468 0 wgd
Cmo11g02045 Cmo-Chr11:13879578 Cmo02g00038 Cmo-Chr2:209735 0 wgd
Cmo11g02045 Cmo-Chr11:13879578 Cmo20g00285 Cmo-Chr20:1382946 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74705 PF00069 Pkinase 3.10E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02045 - - csv:101212378 943.725