Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g02055 ATGGCAAAAGAGATGATGAAGGGGAGCTGCAAAAAGGGCGCCCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGTTGCACTCAAGACTGCGTTTTTGCTCCTTATTTCCCAGCGGATCAACCCCACAAATTCTCCAGTGTTCACAAGGTGTTTGGAGCTAGCAACGTCACCAAATTGTTGCAGGAGTTACCCGAGCAACACCGGAGCGACGCAGTGAGTTCGATGGTGTATGAAGCGAATGCGAGGATTCGAGACCCAATTTACGGGTGTGTGGGAACAATATCGTGCCTACAACGACAAGTAGATGCGCTACAACAACAATTGGCGATGACACAAGCCCAGCTGCTTCATTTCAAAATGGCCCAATTTTCTTTGGCATCACAACCATCGTCCACTGATGATGTCCTCCCTTCGCCGCCCAATACCAATGTGCCCTCATTCACCTCCTTGTGA 459 51.42 MAKEMMKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKMAQFSLASQPSSTDDVLPSPPNTNVPSFTSL 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13918212 13919379 + CmoCh11G020550.1 Cmo11g02055 392674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g02055 152 Coils Coil 96 116 - -
Cmo11g02055 152 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 133 - -
Cmo11g02055 152 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cmo11g02055 152 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cmo11g02055 152 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 6 133 - -
Cmo11g02055 152 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00023 Cmo-Chr2:137845 Cmo11g02055 Cmo-Chr11:13918212 2.61E-67 dispersed
Cmo05g00101 Cmo-Chr5:407067 Cmo11g02055 Cmo-Chr11:13918212 4.66E-25 dispersed
Cmo11g02055 Cmo-Chr11:13918212 Cmo13g00481 Cmo-Chr13:5814170 2.67E-55 dispersed
Cmo18g00146 Cmo-Chr18:1025085 Cmo11g02055 Cmo-Chr11:13918212 3.48E-47 dispersed
Cmo11g02055 Cmo-Chr11:13918212 Cmo04g01166 Cmo-Chr4:5949123 2.70E-55 transposed
Cmo11g02055 Cmo-Chr11:13918212 Cmo04g00129 Cmo-Chr4:659700 3.08E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10681 PF03195 LOB 2.60E-43 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g02055 - - csv:101213100 237.654