Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo11g02055 | ATGGCAAAAGAGATGATGAAGGGGAGCTGCAAAAAGGGCGCCCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGTTGCACTCAAGACTGCGTTTTTGCTCCTTATTTCCCAGCGGATCAACCCCACAAATTCTCCAGTGTTCACAAGGTGTTTGGAGCTAGCAACGTCACCAAATTGTTGCAGGAGTTACCCGAGCAACACCGGAGCGACGCAGTGAGTTCGATGGTGTATGAAGCGAATGCGAGGATTCGAGACCCAATTTACGGGTGTGTGGGAACAATATCGTGCCTACAACGACAAGTAGATGCGCTACAACAACAATTGGCGATGACACAAGCCCAGCTGCTTCATTTCAAAATGGCCCAATTTTCTTTGGCATCACAACCATCGTCCACTGATGATGTCCTCCCTTCGCCGCCCAATACCAATGTGCCCTCATTCACCTCCTTGTGA | 459 | 51.42 | MAKEMMKGSCKKGAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLLQELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKMAQFSLASQPSSTDDVLPSPPNTNVPSFTSL | 152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13918212 | 13919379 | + | CmoCh11G020550.1 | Cmo11g02055 | 392674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo11g02055 | 152 | Coils | Coil | 96 | 116 | - | - | |
Cmo11g02055 | 152 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 6 | 133 | - | - | |
Cmo11g02055 | 152 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 114 | IPR004883 | - | |
Cmo11g02055 | 152 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - | |
Cmo11g02055 | 152 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 6 | 133 | - | - | |
Cmo11g02055 | 152 | MobiDBLite | consensus disorder prediction | 131 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00023 | Cmo-Chr2:137845 | Cmo11g02055 | Cmo-Chr11:13918212 | 2.61E-67 | dispersed | |
Cmo05g00101 | Cmo-Chr5:407067 | Cmo11g02055 | Cmo-Chr11:13918212 | 4.66E-25 | dispersed | |
Cmo11g02055 | Cmo-Chr11:13918212 | Cmo13g00481 | Cmo-Chr13:5814170 | 2.67E-55 | dispersed | |
Cmo18g00146 | Cmo-Chr18:1025085 | Cmo11g02055 | Cmo-Chr11:13918212 | 3.48E-47 | dispersed | |
Cmo11g02055 | Cmo-Chr11:13918212 | Cmo04g01166 | Cmo-Chr4:5949123 | 2.70E-55 | transposed | |
Cmo11g02055 | Cmo-Chr11:13918212 | Cmo04g00129 | Cmo-Chr4:659700 | 3.08E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10681 | PF03195 | LOB | 2.60E-43 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo11g02055 | - | - | csv:101213100 | 237.654 |