Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00001 ATGGCGGCTCGGAGGATATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCACCAGCTCTCCTTTCCAAAGGGAGGAGGCCTTCCGGTAGCAGAACAACTGGCAAATATAGCACCTCCGCTGCTGTTGAGGATCCAATTACTCCATCTGTGAAAGTAAATTATACCCAGCTGCTAATCAACGGACAGTTTGTGGATTCAGTTTCAGGAAAAACTTTTCCTACACTGGACCCAAGGACTGGAGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAGAGATATTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTCGATGATGGGCCTTGGCCTAGAATGACTGCTTATGAAAGGTCAAAGATACTTTTGCGATTTGCCGATTTGGTTGAAAAGCATGCCGATGAAGTTGCAGCACTCGAAACTTGGGACAATGGGAAAACATACGAACAGTCAGCCAAATTGGAAGTCCCAATGTTTGTACGCCTCTTCCGATATTATGCGGGGTGGGCCGATAAGATTCACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTGCAGACCTTGCACGAACCAATTGGTGTTGCGGGTCAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGTCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTATCTATGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGCGGGCGTTCTCAATATTGTTTCCGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGACAAGCTTGCTTTTACTGGATCAACCGAAACAGGGCAGATTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACTTTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTGGATAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCCCGTACTTTTGTTCATGAAAAAGTGTATGATGAGTTTCTAGAAAAATCAAGGAAACGAGCTGCAAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGACGGCGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGGATTGAAGGTGGAGCCACTCTCGAAGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATGTCCAGCCAACAGTTTTCTCGAACGTCAAGGATGACATGACAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGGTTGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCGGCTGGGGTGTTTACTCAAAATATCGACACAGCCAACAGGCTGACCCGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTCGATATATTTGATGCTGCGATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGACGAGAAAAGGGTATTTACAGCCTCAGCAATTATCTGCAAGTGAAGGCTGTTGTCACTCCTTTGAACAACCCTGCTTGGCTCTAA 1608 46.95 MAARRISSLLSRSLASSPALLSKGRRPSGSRTTGKYSTSAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGEVIANVAEGDARDIDLAVSAARKAFDDGPWPRMTAYERSKILLRFADLVEKHADEVAALETWDNGKTYEQSAKLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSAIYVAKLLHEAGLPAGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGQIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFLEKSRKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAQEEIFGPVQTILKYKEVEEVIRRANASRYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLNNPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 477 4056 - CmoCh12G000010.1 Cmo12g00001 392689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00001 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 23 535 - -
Cmo12g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491
Cmo12g00001 535 CDD ALDH_F2BC 52 527 - -
Cmo12g00001 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Cmo12g00001 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Cmo12g00001 535 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 23 535 - -
Cmo12g00001 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491
Cmo12g00001 535 MobiDBLite consensus disorder prediction 26 40 - -
Cmo12g00001 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Cmo12g00001 535 MobiDBLite consensus disorder prediction 20 40 - -
Cmo12g00001 535 SUPERFAMILY ALDH-like 51 530 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00644 Cmo-Chr10:2954680 Cmo12g00001 Cmo-Chr12:477 0 dispersed
Cmo11g00602 Cmo-Chr11:2906497 Cmo12g00001 Cmo-Chr12:477 0 dispersed
Cmo12g00001 Cmo-Chr12:477 Cmo20g00311 Cmo-Chr20:1515459 3.13E-108 dispersed
Cmo05g00005 Cmo-Chr5:19024 Cmo12g00001 Cmo-Chr12:477 0 transposed
Cmo10g00162 Cmo-Chr10:733141 Cmo12g00001 Cmo-Chr12:477 8.09E-115 transposed
Cmo11g00105 Cmo-Chr11:548605 Cmo12g00001 Cmo-Chr12:477 0 transposed
Cmo13g00961 Cmo-Chr13:8317712 Cmo12g00001 Cmo-Chr12:477 1.52E-12 transposed
Cmo12g00001 Cmo-Chr12:477 Cmo05g00003 Cmo-Chr5:13032 4.70E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00001 K00128 - csv:101202756 969.918