Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00017 ATGGAACTGGAACTCTGTTTCTTCTTATGCCATGCCGTTTTTACTGTTTTTCCACTCCTCCATCTTGCTTCTGCTACCCTCTCTCCTTCTGGTGTCAACTACGAAGTCGTGGCTTTGATGGCCATCAAAAATGATTTGATAGACCCCCACAATGTTTTGGAGAATTGGGACTCTAATTCAGTGGATCCTTGTAGCTGGAGAATGGTTACATGTTCTCCAGATGGATACGTTTCTGTTCTGGGGCTACCCAGCCAGAGTTTGTCAGGACTCTTATCCCCGGGGATTGGAAACCTCTCTAAGTTAGAATCAGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAACAACTGTTCTTCCATCTTTCCGGAGCCGTTTTTGTTTGCCCCAGATGCTCTAGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGGGAGATTCAATTTCAGACTGAAGTTGAGATGATAAGTTTAGCTGTGCACCGAAATCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCTTTCATGCCCAATGGAAGCGTTGGATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCTAAAATCATCCATCGTGATGTAAAAGCTGCCAACATTCTCCTTGACGAAGATTTCGAGGCCGTAGTTGGAGACTTTGGGTTGGCCAAACTTCTGGATCACAGAGATTCTCATGTGACTACAGCAGTGCGTGGCACGGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCATCAGAAAAGACTGATGTTTTTGGGTTTGGAATATTGCTTTTGGAATTAATTACTGGTCAAAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAGAAGTTGCACGAGGAAGGAAAGGTGAATGTGATGGTGGATAAGGATCTAAGAGGTAAGTTCGACAGAGTTGAGTTGGAGGAAATGGTCCAGGTGGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCGCAGCACATAGATGCGCCAAGATACCAGCGAGCGTGCGAGAATCCCCCTCAACGATCCTCTCGTGGCAACTATTTCTTCCCTGTTTATTACCGCTCCACTCCCGTTGATTCTCTCTTTTCTTCCTGGTGTTTCTCCTTTTCATCTCCGTCCTTGTCTGATTTAACTTCTAAATCTTCCAAGTTCCCGGCCCATGCTGCTCCCACGCCACCCGTTCGGCCAATTCCTCCCCAAATGGCGTCGCCCTCCAATCATACGCTCAACACCAATGGGAGCTTTAAACTCAATGCCCATCCGCCAAATGGGTCGGGAATTGGAAATGGATCCATTCCCACCCGAGGAAAGTTGGGCCCTGGGAAGGAAAATGAAGAGAGAACCCCGAGTAACTCCATTTCTTCGAAAAACGATACTACTCTATATCAGGAGGAGAATATTCATTCTTCCAATGCTGACGACAAGAATGCGTCAGAAGGAAATGGAGGAAGAAACTCAAGCGAGAGAATTCAAATTACCAACAACTCTCAACCGATGGGCGCATCAAATGACAGCTTCGATGAGGAATGTGACATCTTTGATGGTAAATGGGTGAGGGACGATTCGAAGCCATATTATCCTCCAGGTTCTTGCCCTTACATTGATAGAGACTTTGACTGTCATCTTAATAGGAGGCCAGATGATGGATATGTCAAATGGAAATGGCAGCCAAATGGGTGCAACATTCCAAGTCTGAACGCAACACATTTTCTAGAATTATTGAGGGGAAGAAATCTGGTGTTTGTTGGGGACTCATTGAATAGGAACATGTGGGAGTCTCTGGTGTGCATTCTTCGTCATAGTATTGCCCACAAGGAAAGAGTGTATGAGATATCTGGAAGGACAGACTTCAAGAAGAAGGGCTTCTACGCCTTCCGGGAATCTACATTCGAGAGAGACAACGAAACGATGGAGACATTAAGATTGGATGAAATGGACGAGACGACCGAAATGTACCGTGATGCGGACGTTCTAGTGTTTAATACAGGCCATTGGTGGACTCATGAGAAAACCTCTAGGGGGGAAAACTATTACCAAGAAGGCAACCATTTGCACCCGAGACTGAAGGTGTTGGAAGCGTTTAAGAGGGCTCTCACCACTTGGGGTCAATGGATAGACAACAACGTTGATGGAAATCGAACTCTGGTTTTCTTCAGAGGGTATTCATATTCGCACTTCAGTGGTGGGCAGTGGAACTCGGGGGGTCAATGCGACAATGAAACGGAGCCAATATATAAGGAAGCATACTTGGGGAAGTACCCAAAGAAAATGAGGGCTCTGGAGTATGTGATGGGGGAGATGAAAACGCGGACGTCCTACTTAAACATCACCAGGATGACTCATTATCGGAAGGATGCGCACCCTTCCATTTATAGAATGGAATACAAGACGGAGGAAGAAAGACGTGCAAGTGTGGGAGTTCAAGATTGCAGCCATTGGTGCTTGCCCGGGGTACCCGACACATGGAACGAGCTGCTTTATGGCAGTGAGAGTGACAGTGGACAGGTGGAGGAGCCTGATTTGGTGCAAGTTGGAGCTCCTCCGGAGGTACCCAGCTTGCCGGAGCTGGGCGAGTTCATGGAAGCCGATAAGATTGCGCTGGCAGAGGCAACGGGACTACACCCCAACCAAGCTAACAATTATGGATACCTTCTCGCATTCTGGCTAATCATGTGCCTCAACAATCTTACGCTACGCTGGAGTGCTGAGAAAGAATGA 3288 46.35 MELELCFFLCHAVFTVFPLLHLASATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSVLGLPSQSLSGLLSPGIGNLSKLESVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSSIFPEPFLFAPDALEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVGSRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHEEGKVNVMVDKDLRGKFDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIDAPRYQRACENPPQRSSRGNYFFPVYYRSTPVDSLFSSWCFSFSSPSLSDLTSKSSKFPAHAAPTPPVRPIPPQMASPSNHTLNTNGSFKLNAHPPNGSGIGNGSIPTRGKLGPGKENEERTPSNSISSKNDTTLYQEENIHSSNADDKNASEGNGGRNSSERIQITNNSQPMGASNDSFDEECDIFDGKWVRDDSKPYYPPGSCPYIDRDFDCHLNRRPDDGYVKWKWQPNGCNIPSLNATHFLELLRGRNLVFVGDSLNRNMWESLVCILRHSIAHKERVYEISGRTDFKKKGFYAFRESTFERDNETMETLRLDEMDETTEMYRDADVLVFNTGHWWTHEKTSRGENYYQEGNHLHPRLKVLEAFKRALTTWGQWIDNNVDGNRTLVFFRGYSYSHFSGGQWNSGGQCDNETEPIYKEAYLGKYPKKMRALEYVMGEMKTRTSYLNITRMTHYRKDAHPSIYRMEYKTEEERRASVGVQDCSHWCLPGVPDTWNELLYGSESDSGQVEEPDLVQVGAPPEVPSLPELGEFMEADKIALAEATGLHPNQANNYGYLLAFWLIMCLNNLTLRWSAEKE 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 102001 112498 + CmoCh12G000170.1 Cmo12g00017 392705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00017 1095 MobiDBLite consensus disorder prediction 635 679 - -
Cmo12g00017 1095 PANTHER PROTEIN NSP-INTERACTING KINASE 3 10 106 - -
Cmo12g00017 1095 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cmo12g00017 1095 Pfam Protein kinase domain 229 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00017 1095 Gene3D Ribonuclease Inhibitor 31 127 IPR032675 -
Cmo12g00017 1095 SUPERFAMILY L domain-like 33 118 - -
Cmo12g00017 1095 SMART serkin_6 228 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00017 1095 ProSiteProfiles Protein kinase domain profile. 228 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00017 1095 MobiDBLite consensus disorder prediction 568 679 - -
Cmo12g00017 1095 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 752 1017 IPR026057 GO:0016740
Cmo12g00017 1095 SUPERFAMILY Protein kinase-like (PK-like) 212 506 IPR011009 -
Cmo12g00017 1095 Gene3D Transferase(Phosphotransferase) domain 1 305 520 - -
Cmo12g00017 1095 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Cmo12g00017 1095 Gene3D Phosphorylase Kinase; domain 1 197 304 - -
Cmo12g00017 1095 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672|GO:0006468
Cmo12g00017 1095 Pfam PMR5 N terminal Domain 698 751 IPR025846 -
Cmo12g00017 1095 PANTHER PROTEIN NSP-INTERACTING KINASE 3 104 532 - -
Cmo12g00017 1095 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 104 532 - -
Cmo12g00017 1095 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 106 - -
Cmo12g00017 1095 MobiDBLite consensus disorder prediction 591 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00103 Cmo-Chr6:593647 Cmo12g00017 Cmo-Chr12:102001 1.73E-136 dispersed
Cmo12g00017 Cmo-Chr12:102001 Cmo04g02959 Cmo-Chr4:20940568 0 dispersed
Cmo14g00411 Cmo-Chr14:1952972 Cmo12g00017 Cmo-Chr12:102001 4.33E-139 dispersed
Cmo14g00958 Cmo-Chr14:5105707 Cmo12g00017 Cmo-Chr12:102001 1.04E-97 dispersed
Cmo05g00036 Cmo-Chr5:129030 Cmo12g00017 Cmo-Chr12:102001 0 transposed
Cmo12g00017 Cmo-Chr12:102001 Cmo05g00035 Cmo-Chr5:125060 8.09E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74706 PF00069 Pkinase 6.80E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00017 - - csv:101208885 822.387