Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00019 ATGAACACTGCATCGCCACTTCTTCCCACATATGGCTTCTTCATCATTTTCATCACCGCTCTTTTCTTGCTTCAGTCCACGTCCACACTGGCTAACCCCAGATCCCAAACGGTGAACATACTTTGTTCCACCGTGATAGAGCATAATACAACGGCTTTTGTGCCAAACTTCGTTGCCACCATGCAAATAATCAGCGATCAAATGCGAACTGGTGGTTTTGGAGTGGCACTGGCAGGGAAAGGGCCGGACGCCAACTACGGCCTCGCTCAATGTTACGGAGATTTGTCGCTGATGGATTGTGTGTTATGTTATGCCGAAGCTCGTACTGTCCTGCCTCAGTGCTTTCCTTTCAATGGTGGCCGAATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATAACGAATACAAGGGGCCTCTGGACAGGGCTGTGTGCGGCAACACCTCCATTACTACCAACTCCCTTTTTGGGCAGTCGGCCAGGCAGGCTGTGGGCCGAGCAGTTGACATTGCACCCAACAATGGAGGGTATGCCAGAGTTGAAGTGCCTGTCCCTGGAACCTCCAATCTCTCGGTCTACCTGTTGGCTCAGTGCTGGAAGAATTTGAAACGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCCTCAAATGCTTGCCTCACTCCGAAGCAAGGGCCCTCAACACTGGCTGCTTCATCAGATACTCTAGCGTTGACTTCCTAAATAGGGAAGCTCGAGCTGCAAGGTTCAGAGGTAACATTATAGCAATTGTAATCTCAGTGGTAAGCTCGATTGCTGTTTTGGTCGCTGGTGTGGTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGATGAAACGAAAAGGTTCAAATGATGCAAACAAGATGGTGAAAACACTCAACAATAGCAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGTCAACAGAATGTTTTGCTGAGGCTAACATGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGCCAGTCTTCTTATTGGAGTTCTGTCGGACGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAATAACAAACATAGAGCAGCAGACTTCTACAATGAAGTGAACATAATTAGTAGTGTGGAGCACAAAAATTTAGTAAGGTTGCTTGGCTGTAGTTGTTCTGGACCTGAAAGTCTGCTCGTCTATGAATTCCTTCCCAACAAGAGCCTCGACCGCTTCATTTTTGATCGAGACAGAGGCAGATCACTCAATTGGGAGAAGAGATTTGATATTATCGTGGGAACAGTTGAAGGTTTGGCTTACCTGCACGAGAACTCGAAAACCAAGATCATTCACCGAGACATCAAGGCTAGTAACATCTTGCTTGACTCAAAGTTCCGAGCTAAAATTGCTGATTTTGGATTGGCTAGATCCTTTGAAGAAGATGTGAGCCACATCAGCACTGCCATTGCCGGAACCTTGGGGTATATGGCGCCAGAGTACTTGGCTCATGGCCAGCTAACAGAAAAGGCTGATGTCTACAGTTTTGGGGTGGTTTTGCTGGAGACCATCACTGGGATACAAAACAGTAGGAGCGAAACCTCGGACTACTTGGAAAGCATAGTACTCATTACATGGAAGCATTTTGAATCGGGAACAGTGGAAGGGATATACGACCCGAACCTGATGGTTGATGAGAAGGAGGGAGGTGGGAGCATAAAAGAGGAGATATTGAGAGTGGTGCACATAGGACTTCTGTGCACTCAGGAGACTGCATCACTGCGACCCACAATGTCAAAGGTACTGCAGATGCTGATGAAGAAGGAAGACAAACTTCCAGCGCCGACCAACCCGCCTTTCATGGACGAGAGGACAATGGAACTGAACGACACCAGCGACGCCCCGTCCCAGTACAACGTCACGGAAGCTTCCCGACCTTCTTCGTCGTCGGCGGCGGCAGCAGCCTCCTTATTCAGAATCAAGCAGACAAACGGAACCCCAGATTCAATGGCGATCCACCTTGTTTATGCTCGCAAATATGTCCTATTTTCAGTCCTCGCTATTCTTCTGCTACACCTAACTTCGGCTGTGGGAAAGCCAAGAGATCAAACTGTGAAAGTGATTTGCGGGAAAGAACTAGAGCACAACACCACGGCGTACGTTCCAAATTTTTTTGGTTCAATGGAAAAAGTAAGACAACAAATCACAACTTCGGGATTTGGAACGGCGGGTACAGGAATAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGAAGATCTCTCATCCCACGAATGTGTGCTGTGTCATTCTCAAGCACGTACGGTGCTTCCCCAGTGCTTCCCTTTCAACGGTGGCCGTGCATTCATCGATGGCTGCTTCTTGAGGTTCGAAAACTATAGCTTTTTTGACGAATACAAAGGACCCGAAGACACTGCAGTTTGCGGGAACCTGACCCAAAATGACCCCAACTATAGAGGAGCAGCCAGGGATGCGGTGATGCAAGTAGTCAACGGTGCACCAGGCAACAAAGGCTTTGCAAAAGCTCAAGTGGCTGTGCCCGGGATGGCGAAGGAGTCTGCCGTGTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAGCCACAGCTCTTGCAGCTCGTGTTTGAAAATTGCTTCTGCCTCGATGCTGCAGCAGTGTTTACCTCGATTGGAAGGGCGAGCGTTGTACACAGGCTGCTTCATGAGGTACTCAAACACAGACTTTCTGAATAAGGACATCAAAGATAGTTCCAAAGGTGGGACAATAACTGCGGGGATCATCATTTCAATTTTGAGTTCTGTTGTTGTTATGATAATCGTAGCGGTGATCGGTACTTTTATCTGGAGGCGCAGATACATTCAAAAAAAAAGGAAAGGAGGTTCAGCTGATGTGAAGAAGTTAGCGAAAACTCTTCAAGATAGTAATTTGAACTTCAAGTACTCAACCCTTGAAAAAGCAACCAACAATTTCAGCCTCGATAACAAGATTGGACAAGGGGGGTTTGGCTCTGTTTATAAGGGAACTCTACCTGATGGAAGAGAGATTGCTGTCAAGAGATTCTTCTTTGATAGCAGACATAGAGCAGCAGATTTCTTCAATGAAGTCAACATGATCAGCAGTGTCGAACATAAAAATCTGGTTAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATTCCTGCCAAACAAGAGTCTCGATCGCTTCATTTTTGGTGCCAATAACAGCAAAGCTCTTGATTGGGATAAGAGATATAACATCATCATTGGCACGGTTGAAGGTTTAATATATCTACATGAAAATCCAGAGAACAAAATCATACACAGAGATATAAAGGCCAGTAATATCTTGCTCGATCTAAAGCTTCAAGCAAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAGAACAAGAGTCACATTAGCACCGCCATTGCAGGAACTCTAGGATATATGCCTCCCGAGTATCTAGCTTATGGTCAGCTAACAGAAAAGGTCGACGTCTATAGCTTTGGAGTGCTTTTGTTAGAAATAGTTACAGGATTCCAATACAGTGGCATCCAAGTCTCGGGAAATATTGAAAGTCTTGTCACTGCTGAGGTTCCATCTCTTCGACCAACAATGTCGAAGGTACTACGAATGCTGACCATGGAGGAGGAAGAGCACCTTCCTCCACCCACCAAACCGCCTTTCATGGATGAGATGACCATGGAACTTGATGGCTCATGCAAGGACTCGCAATATTGTTCTATTACAGAGGGCTCTTATTCAACTGCCACATTCAGCCATAGTTCTTTTCATCCAAGATAA 3858 46.16 MNTASPLLPTYGFFIIFITALFLLQSTSTLANPRSQTVNILCSTVIEHNTTAFVPNFVATMQIISDQMRTGGFGVALAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYNEYKGPLDRAVCGNTSITTNSLFGQSARQAVGRAVDIAPNNGGYARVEVPVPGTSNLSVYLLAQCWKNLKRSSCTSCLQNASASILKCLPHSEARALNTGCFIRYSSVDFLNREARAARFRGNIIAIVISVVSSIAVLVAGVVIGIYIWNNRYVKMKRKGSNDANKMVKTLNNSSLNFKYSTLEKSTECFAEANMLGQGGFGTVYKASLLIGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDRDRGRSLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKFRAKIADFGLARSFEEDVSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETITGIQNSRSETSDYLESIVLITWKHFESGTVEGIYDPNLMVDEKEGGGSIKEEILRVVHIGLLCTQETASLRPTMSKVLQMLMKKEDKLPAPTNPPFMDERTMELNDTSDAPSQYNVTEASRPSSSSAAAAASLFRIKQTNGTPDSMAIHLVYARKYVLFSVLAILLLHLTSAVGKPRDQTVKVICGKELEHNTTAYVPNFFGSMEKVRQQITTSGFGTAGTGIGPDASYGLAQCHEDLSSHECVLCHSQARTVLPQCFPFNGGRAFIDGCFLRFENYSFFDEYKGPEDTAVCGNLTQNDPNYRGAARDAVMQVVNGAPGNKGFAKAQVAVPGMAKESAVYALGQCWRSLSHSSCSSCLKIASASMLQQCLPRLEGRALYTGCFMRYSNTDFLNKDIKDSSKGGTITAGIIISILSSVVVMIIVAVIGTFIWRRRYIQKKRKGGSADVKKLAKTLQDSNLNFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLPDGREIAVKRFFFDSRHRAADFFNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFGANNSKALDWDKRYNIIIGTVEGLIYLHENPENKIIHRDIKASNILLDLKLQAKIADFGLARSFQENKSHISTAIAGTLGYMPPEYLAYGQLTEKVDVYSFGVLLLEIVTGFQYSGIQVSGNIESLVTAEVPSLRPTMSKVLRMLTMEEEEHLPPPTKPPFMDEMTMELDGSCKDSQYCSITEGSYSTATFSHSSFHPR 1285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 116551 123306 - CmoCh12G000190.1 Cmo12g00019 392707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00019 1285 ProSiteProfiles Gnk2-homologous domain profile. 811 918 IPR002902 -
Cmo12g00019 1285 Pfam Salt stress response/antifungal 828 915 IPR002902 -
Cmo12g00019 1285 Pfam Salt stress response/antifungal 51 134 IPR002902 -
Cmo12g00019 1285 Pfam Salt stress response/antifungal 154 243 IPR002902 -
Cmo12g00019 1285 Pfam Salt stress response/antifungal 723 804 IPR002902 -
Cmo12g00019 1285 Gene3D Phosphorylase Kinase; domain 1 962 1075 - -
Cmo12g00019 1285 Gene3D Phosphorylase Kinase; domain 1 288 407 - -
Cmo12g00019 1285 ProSiteProfiles Gnk2-homologous domain profile. 142 247 IPR002902 -
Cmo12g00019 1285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1209 1264 - -
Cmo12g00019 1285 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1121 1133 IPR008271 GO:0004672|GO:0006468
Cmo12g00019 1285 MobiDBLite consensus disorder prediction 633 650 - -
Cmo12g00019 1285 SUPERFAMILY Protein kinase-like (PK-like) 312 637 IPR011009 -
Cmo12g00019 1285 ProSitePatterns Protein kinases ATP-binding region signature. 333 360 IPR017441 GO:0005524
Cmo12g00019 1285 ProSitePatterns Protein kinases ATP-binding region signature. 1006 1028 IPR017441 GO:0005524
Cmo12g00019 1285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 684 1214 - -
Cmo12g00019 1285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 1209 1264 - -
Cmo12g00019 1285 ProSiteProfiles Protein kinase domain profile. 327 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00019 1285 ProSiteProfiles Protein kinase domain profile. 1000 1285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00019 1285 CDD STKc_IRAK 333 610 - -
Cmo12g00019 1285 ProSiteProfiles Gnk2-homologous domain profile. 35 136 IPR002902 -
Cmo12g00019 1285 SUPERFAMILY Protein kinase-like (PK-like) 984 1249 IPR011009 -
Cmo12g00019 1285 ProSiteProfiles Gnk2-homologous domain profile. 705 806 IPR002902 -
Cmo12g00019 1285 Pfam Protein kinase domain 1001 1202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00019 1285 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Cmo12g00019 1285 SMART serkin_6 1000 1247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00019 1285 SMART serkin_6 327 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo12g00019 1285 Gene3D - 144 247 IPR038408 -
Cmo12g00019 1285 Gene3D - 705 806 IPR038408 -
Cmo12g00019 1285 Gene3D - 816 918 IPR038408 -
Cmo12g00019 1285 Gene3D - 34 136 IPR038408 -
Cmo12g00019 1285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 684 1214 - -
Cmo12g00019 1285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 15 640 - -
Cmo12g00019 1285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 15 640 - -
Cmo12g00019 1285 MobiDBLite consensus disorder prediction 615 650 - -
Cmo12g00019 1285 Pfam Protein tyrosine and serine/threonine kinase 331 534 IPR001245 GO:0004672|GO:0006468
Cmo12g00019 1285 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
Cmo12g00019 1285 Gene3D Transferase(Phosphotransferase) domain 1 1076 1240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00040 Cmo-Chr5:150516 Cmo12g00019 Cmo-Chr12:116551 0 dispersed
Cmo12g00019 Cmo-Chr12:116551 Cmo14g00677 Cmo-Chr14:3463304 5.66E-142 dispersed
Cmo12g00019 Cmo-Chr12:116551 Cmo18g00787 Cmo-Chr18:9409551 3.78E-134 wgd
Cmo12g00019 Cmo-Chr12:116551 Cmo05g00039 Cmo-Chr5:147272 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74707 PF00069 Pkinase 1.40E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00019 - - cmax:111496519 1211.44