Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00025 ATGAGGGACCAAACCTCTGGCTTGCGATTTAACGACTCCTCTTGTTGCTTGAAGCGGAAAAGACCTCCCAAGATTGAGATCCCTAACGTCTTACGAGAGATTCAAGCCGGAAAACTTGAAGGAACCACTCCCCGAACCGATTCCCTCTCCTCCCCTGACTTTGCGGATCATGTAGGGGTTTTCTCCGTCAAGGGCAAGAAGAGGTTCATGGAAGACACTCACAGGATCATTTCTTGCATGAAAGGCCACTTCAATGATGCCTTTTTTGGCGTTTATGATGGCCATGGAGGCAGGAAGGCAGCCAAATTTGTTGCAGAAAATTTGCACAAGAACATACTTGAAGTGGTGGCCAATTGCACGGAATCTGCACAGAAGGAGGAAGCAATTAAAGCTGCTTTCTTGAAAACGGACGGGGACTTCTTGAATCTGGGTTTAGGCAGTGGTGTCTGCTGTGTCACAGCTCTGATACAAGGAGAAGAACTTGTTGTTTCCAATTTGGGAGATTGTAGGGCTGTTCTTTCTAGAGGAGGAGTAGCTGAAGCAGTCACAAAAGACCATAGAGTTGAACAGGAGGATGAAAGGAAACGAATAGAGAACAAGGGTGGATACGTTGAGATTCACAGGGGGGCATGGAGAGTTCATGGAGTTCTTTCTGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGACTGGGTACTGGCAGAGCCTGATTCAAAGGTCCTACTTCTTAGTGAAGACATGGAATTTCTTGTTCTAGCCACTGATGGATTATGGGAAAAGGTTGGGAACCAAGAGACCGTTGATGTCGTGACACGACTGAGGTTGATGGATAAAAGTTTTGGGCTACCAAAATGTTCCTTGAGAAGTACTAGCCATGCCCATTGCTCTGTGAACCCAAGTCCATCAAAACTGCGGAGAGTTTCTTTGGTCACGCAACCGAAAGGAGGGGGGATGGACCAATCTCCGATCTGTGACAAGGCAATGGATAGCTCTGAAGAAGCTGAATATGACTATTCTTGTGAAATTGAAAGTCCTAGAACAAAATCAAGGAGAATATCGTTGGTCAGACATAAAAAGATGAAGACAGAATCTTCACCTAAGGAGAATAATGATAGCTATAGGAAGAGACCCACTTCCAGTAGACTTGTGGCTGCTTGTAAGGAACTTGTAGATCTAGCTCTAAGTAGAGGTAGCCTGGATGACATTACCGTAATAATTGTCGACTTAAGCCACTTTAGGTGCGAGAGTCGGTCTGAGAATGTTCGTAAGTTTGTTTGA 1278 45.15 MRDQTSGLRFNDSSCCLKRKRPPKIEIPNVLREIQAGKLEGTTPRTDSLSSPDFADHVGVFSVKGKKRFMEDTHRIISCMKGHFNDAFFGVYDGHGGRKAAKFVAENLHKNILEVVANCTESAQKEEAIKAAFLKTDGDFLNLGLGSGVCCVTALIQGEELVVSNLGDCRAVLSRGGVAEAVTKDHRVEQEDERKRIENKGGYVEIHRGAWRVHGVLSVSRSIGDAHLKDWVLAEPDSKVLLLSEDMEFLVLATDGLWEKVGNQETVDVVTRLRLMDKSFGLPKCSLRSTSHAHCSVNPSPSKLRRVSLVTQPKGGGMDQSPICDKAMDSSEEAEYDYSCEIESPRTKSRRISLVRHKKMKTESSPKENNDSYRKRPTSSRLVAACKELVDLALSRGSLDDITVIIVDLSHFRCESRSENVRKFV 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 146443 149863 + CmoCh12G000250.1 Cmo12g00025 392713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00025 425 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Cmo12g00025 425 Pfam Protein phosphatase 2C 57 273 IPR001932 -
Cmo12g00025 425 CDD PP2Cc 57 409 IPR001932 -
Cmo12g00025 425 ProSiteProfiles PPM-type phosphatase domain profile. 57 409 IPR001932 -
Cmo12g00025 425 MobiDBLite consensus disorder prediction 351 377 - -
Cmo12g00025 425 PANTHER PROTEIN PHOSPHATASE 2C 14-RELATED 9 413 - -
Cmo12g00025 425 SMART PP2C_4 47 407 IPR001932 -
Cmo12g00025 425 MobiDBLite consensus disorder prediction 358 375 - -
Cmo12g00025 425 PANTHER PROTEIN PHOSPHATASE 2C 9 413 IPR015655 GO:0004722|GO:0006470
Cmo12g00025 425 Gene3D - 45 415 IPR036457 -
Cmo12g00025 425 SUPERFAMILY PP2C-like 54 410 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00025 Cmo-Chr12:146443 Cmo15g00018 Cmo-Chr15:135022 1.77E-64 dispersed
Cmo12g00025 Cmo-Chr12:146443 Cmo05g00052 Cmo-Chr5:183619 3.49E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00025 - - csv:101209288 657.907