Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00028 ATGTCAAAACCGTGGGGCGGAATTGGAGCCTGGGCTGCTGATGCCGAGCGTGCTGAGGCTGAGGAACGAGAGGCGCAAGCTGCTGCGGCCGCCTCCCAAGCAGAATCGAAGAATTTCCCTAGCCTTAAGGAAGCTGTCAACACCAAGCCCAAGAAGAAGAAGATGACGCTGTCGGAATTCACTATGGGGACCTTGACGGGTCCGGGCGCCGGCAGTAGGCAAACAGACAGCAAGGGCTTGACGCCGGAGGAGATGCTTCGACTTCCGACTGGCCCCAAAGACCGTTCTGGTGAAGAAATGCGTCCTGGCCGACTTGGTGGGGGATTTCCCACTTATGATCGGCACAGTATGCCTGCTGGTCGATTTCGGGACCGTGATGAAGGCGATGGGTCTTGGGGTGGTGGTCGACGATCGTTTGGTGGGTTCGATGATGATCGTAGGGATCCACCTCCTAGGGCTTCCAATTTCGACCAACCTTCAAGGGCTGACGAGGTGGATAATTGGGCAATGACTAAGAAATCTCCCACATTGGCTTCAGAGCGACAGAATAGGTACGGGTCGCTAGGCGGTGGCATGGGTGGAATTTCATCCAGGGCAGACGAGGTCGATAGCTGGGCCAGTGCGAAAAAACCTGTTCCATCGAGATCCTCCACTTTTGGTTCTGGTTACCGTGACCGTGAGGTGAATGAGCATGATCGCTGGACTAGAGGCAGTTCACGTGATAGTGACACAGAACGACCCCGGTTAGTATTGGATCGACCCAAAGCTAATCTCCTTACAAATGAAGCAACAAGGTCGAACAAGCCAAGTCCCTTTGGAGCAGCAAGGCCAAGAGAGGAAGTTTTGGCTGAGAAGGGGTTGGATTGGAAGAAGCTGGATACAGAAATTGAGGCCAAAAGAACCAGTAGGCCAACCAGTGCTCACTCTAGCAGACCTTCGAGTGCTCAATCGAGCCGTTCAGAGGGTCCAGGATTGCAGGGAGTAGAAAATGTGGTGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAGCCTAGGGAGGTTTTGCTGGAGGAACGTGGCAAGGACTGGCGGAAGATAGATCTGCAACTTGAGCGTCGTGCTGTGGACAGGCCTGAAACAGAAGAGGAAAAGATGTTGAAAGAGGAAATTGATGTTCTAAGAAAGGAATTTGAGAAAGGCCTATCTCTGAATGCTAAGAAAGAATCGATGCAAGAATCTGCCGTAGAGATACAAAATCTGCGTGACAGAATAAATAAAAAAGAATGTGAACTGGAGGCGCTGGTCCTTGATTTGGATGATAAGGTACGCTTCGGGAAGAAAGCAGCTGAGAGACCTGGCTCTGGAGCAGGTAGGGCTGCTGTCTTTCCCGAAAGACAATCTTCTCAAGTATCCTTTGATGAGTCCAGAAGTTTCGAGTCTATGGAACGGCCTCGATCACGTGGCACTCCAGATGTGTGGAGTAGATCTGCTGAGGATGGAAAACCAATACAAGGTGCCAGAGATGGAGGATTTTTGGGCAACAGAGACATGAACAGGCAGAAAGTGTTGCCTAATCAAATCAAAAGTCATTTTAGAATTGAGATAACAAAGCATATTTTTCTAGGCGAATGA 1617 50.65 MSKPWGGIGAWAADAERAEAEEREAQAAAAASQAESKNFPSLKEAVNTKPKKKKMTLSEFTMGTLTGPGAGSRQTDSKGLTPEEMLRLPTGPKDRSGEEMRPGRLGGGFPTYDRHSMPAGRFRDRDEGDGSWGGGRRSFGGFDDDRRDPPPRASNFDQPSRADEVDNWAMTKKSPTLASERQNRYGSLGGGMGGISSRADEVDSWASAKKPVPSRSSTFGSGYRDREVNEHDRWTRGSSRDSDTERPRLVLDRPKANLLTNEATRSNKPSPFGAARPREEVLAEKGLDWKKLDTEIEAKRTSRPTSAHSSRPSSAQSSRSEGPGLQGVENVVKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLERRAVDRPETEEEKMLKEEIDVLRKEFEKGLSLNAKKESMQESAVEIQNLRDRINKKECELEALVLDLDDKVRFGKKAAERPGSGAGRAAVFPERQSSQVSFDESRSFESMERPRSRGTPDVWSRSAEDGKPIQGARDGGFLGNRDMNRQKVLPNQIKSHFRIEITKHIFLGE 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 163125 168461 - CmoCh12G000280.1 Cmo12g00028 392716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00028 538 MobiDBLite consensus disorder prediction 59 79 - -
Cmo12g00028 538 Coils Coil 15 37 - -
Cmo12g00028 538 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 516 IPR010433 GO:0003743
Cmo12g00028 538 MobiDBLite consensus disorder prediction 117 132 - -
Cmo12g00028 538 MobiDBLite consensus disorder prediction 278 304 - -
Cmo12g00028 538 MobiDBLite consensus disorder prediction 442 511 - -
Cmo12g00028 538 MobiDBLite consensus disorder prediction 471 489 - -
Cmo12g00028 538 MobiDBLite consensus disorder prediction 1 346 - -
Cmo12g00028 538 MobiDBLite consensus disorder prediction 305 324 - -
Cmo12g00028 538 Pfam Plant specific eukaryotic initiation factor 4B 1 505 IPR010433 GO:0003743
Cmo12g00028 538 Coils Coil 398 432 - -
Cmo12g00028 538 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 1 516 - -
Cmo12g00028 538 MobiDBLite consensus disorder prediction 224 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01728 Cmo-Chr11:12225354 Cmo12g00028 Cmo-Chr12:163125 1.85E-33 dispersed
Cmo12g00028 Cmo-Chr12:163125 Cmo20g00764 Cmo-Chr20:3837167 4.77E-06 dispersed
Cmo12g00028 Cmo-Chr12:163125 Cmo05g00053 Cmo-Chr5:191618 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00028 - - csv:101206526 760.37