Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00034 ATGGCTTCCTTATCTCCTTGTCGCCCAAATTTTATGCTCTCTTCATTTCCGAACCGTGTTCCGACCTCAAATCCTCTATTTCATGCGGTCCAATTCCGAGGTTTATCCCACCACAAGCCCTTCCTTCGCGGTTCCCTTGCCGTTACGAGATTCGGGCTTAAACCCGAGTTCTTGCCTGACCCAGATAACGCCGAGGGCTTTGTGAGGGAGTTGTTCGGCAAAGCTGAGAGCGTTCTGTATACGATAGCCGACGCCGCCGTGTCTGCTTCGCCGGAAGACGTGACCACCGCCAAGCAAACTGAGGATTGGTTTACGGGGATTACCAATTACATGGAGAGCGTCCTTAAAATTCTTGAGAATGGACTTTCTACTCTGCATGTTCCTTATGCCTATGGTTTTGCCATTATACTCCTTACAGTTCTTGTTAAGGCTGCCACATTTCCTTTGTCAAAGAAGCAGGTAGAATCTGCAACGGCAATGCGTTCGTTGCAACCGCAAGTAAAGGCCGTTCAGCAACGTTATGCCGGGGATCAGGAGAGGATTCAAATTGAAACTGCTCGACTCTACAAATTAGCTGGAATAAACCCGTTTGCAGGATGCCTACCTACGTTGGCTACAATCCCCGTATGGATTGGACTATACAGAGCTCTTTCAAATGTGGCCAATGAGGGTCTCCTCACAGAAGGCTTTTTCTGGATACCGTCTCTGGCTGGTCCAACTACGATCGTTTCTCGACAAAGTGGGAGTGGTATCTCTTGGCTCTTTCCATTTGTTGATGGTCATCCACCACTTGGGTGGTCAGATACCTTGGCATATCTTGTCTTGCCTGTGTTGCTGGTTGTGTCGCAGTACATCTCGGTTCAGATTATGCAATCGACGCAGAATAATGATCCAAACATGAAGAGTTCTCAAGCCATAACGCAGTTCCTACCGTTGATGATTGGATATTTTGCACTTTCAGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACCAATAACATCTTGAGCACAGCACAGCAGGCATGGCTTCAAAAGTCAGGTGGTGCAAAGACCCCGGACAAACGGTTCATCGATGAAAGCATCAAACAAGAACAAGCCCGAGTCCAGATCCAATCGCCCGAGTTAAAGTCAGTTTCGATGAGCACAGTAGCCAGAGAATCAGAGAAGCCAACAGCAGAAGGGGTAAAACCTGGTGAAAGATTTAAACAGATAAAGGAGCAAGAGGGTAGGATAAGACAGCAAAGAGAAGAAGAAAAGAGGAAAGCTGAAGAGGCAGCCAAGCTTGAATCTCAGACAATAAATGACAGTGACAAGAGCGCAGCTGCTAGATTTGTTGTCAATGGCAGTCTTTCTAGACAGGATGTGGAGGAAGTTCAAAACTCCATGTCCACATCTACTATGCTGCATAGAACCGACGCGGACGACGAGGTTAGCGATACAAGCGAGCATCTGCCAAGTGTAACTCAGGAAGAGAACGTAGTCGAGACGTACACCGGTGTGGGCAAGGATGCCAAACTAAATGGAGAGTAA 1530 47.39 MASLSPCRPNFMLSSFPNRVPTSNPLFHAVQFRGLSHHKPFLRGSLAVTRFGLKPEFLPDPDNAEGFVRELFGKAESVLYTIADAAVSASPEDVTTAKQTEDWFTGITNYMESVLKILENGLSTLHVPYAYGFAIILLTVLVKAATFPLSKKQVESATAMRSLQPQVKAVQQRYAGDQERIQIETARLYKLAGINPFAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIVSRQSGSGISWLFPFVDGHPPLGWSDTLAYLVLPVLLVVSQYISVQIMQSTQNNDPNMKSSQAITQFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKSGGAKTPDKRFIDESIKQEQARVQIQSPELKSVSMSTVARESEKPTAEGVKPGERFKQIKEQEGRIRQQREEEKRKAEEAAKLESQTINDSDKSAAARFVVNGSLSRQDVEEVQNSMSTSTMLHRTDADDEVSDTSEHLPSVTQEENVVETYTGVGKDAKLNGE 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 197498 200916 - CmoCh12G000340.1 Cmo12g00034 392722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00034 509 Pfam 60Kd inner membrane protein 131 345 IPR001708 GO:0016021|GO:0032977
Cmo12g00034 509 Coils Coil 404 432 - -
Cmo12g00034 509 PANTHER OXA1 74 432 IPR001708 GO:0016021|GO:0032977
Cmo12g00034 509 PANTHER BNAA09G28180D PROTEIN 74 432 - -
Cmo12g00034 509 MobiDBLite consensus disorder prediction 389 431 - -
Cmo12g00034 509 MobiDBLite consensus disorder prediction 377 435 - -
Cmo12g00034 509 MobiDBLite consensus disorder prediction 453 468 - -
Cmo12g00034 509 MobiDBLite consensus disorder prediction 453 491 - -
Cmo12g00034 509 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 131 345 IPR028055 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00616 Cmo-Chr1:3166970 Cmo12g00034 Cmo-Chr12:197498 3.06E-140 dispersed
Cmo12g00034 Cmo-Chr12:197498 Cmo04g00734 Cmo-Chr4:3649167 4.25E-11 dispersed
Cmo12g00034 Cmo-Chr12:197498 Cmo05g00063 Cmo-Chr5:234271 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00034 K03217 - csv:101205346 801.971