Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00037 ATGTATTATCGGCTATCGAGGTCTTCTTGTAAGGATTCTCTGAAAGTCCTCGAAGAAGATGTAAATCGCGCCAATGCTCTGGCTGTTGCAATTCCAAGAGCCAAACATGGTTCATATCTCCAAATGAAATTGGTTTACAGTCAATTAGCTCCACTGTTTCTGTTTTTGATGCAATGGGTTTACACAGATGGAAGACCCAACCTGTCAGCCCATGGAAGAAAGGCCACTCTCAAAGATTTTTATGCTGTGATATTGCCATCCCTTCAACGGCTCCAAGCGAACGCCAGGGAGTTGGATAACGCTAAAGAGAAGCGTGTGGGAGTCGAAGGAGATGGAAAGCTCTCCAATGGTGATGTAGAGAGAGAAGAAGAATGTGGGATTTGCTTAGAAGCTTCCACAAAGATGGTGTTGCCAAACTGCTGCCATTCAATGTGCATCAAATGCTACCACAATTGGAACACGAGATCGGAGTCGTGCCCGTTTTGTCGGGGGAGCTTGAAGAGGATCAAATCAGAGGATTTGTGGGTGCTAACTTGCAGTGAAGATGTGGTTGACACTGAAAAAGTCTCCAAGGAAGATCTGTCACGCTTCATCATCATGGAAAATGGCTTCTCTTCGCCTCGAAGCGATGTGTTTCCTGTCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTCAAAATCCTGGAAAAGATGCTCAAAAAGTGCTCTTATGAAGTGACTACATGTTGTCTGGCAAGGGAGGCTCTAAGCCTGCTAAGGGAGAGAAAAGATGGATACGACATCGTAATCAGCGACGTAAACATGCCCGACATGGACGGTTTTAAACTCCTCGAGCATGTAGGATTAGAAATGGACCTACCAGTTATCAAGCCCTCATTTCTTATGTATAAGTTCGTCTTCCTCCATGCAGTGATGTCAGTTGATGGAGAAACAAGCAGAGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAGCCAATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTACTTCGAAAGAAGATTCAAGAGGGAAGAGATATTGAAGGCCATGATGTTTTTGAAGGCCTTCAAATCCTTAGAAATGGATCAGATAGGTATGATGATAGCCAGTTCCTTAGAGTAGAGGAGCTCTTTTCAGTGAGGAAAAGAAAAGATGTTGATAAGTACGAGGAAAAAGAGTTTGGTGAGACATGTTCTACAAAGAAAGCCAGAGTTGTTTGGTCGGTTGATCTGCACCAGAAATTTGTTGAAGCAGTAAACCAGATAGGCTTTGACAAAGTTGGCCCTAAGAAGATTCTTGATCTGATGAATGTCCCATGGCTAACAAGGGAAAATGTAGCTAGCCATTTGCAGAAGTATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGGATGAAACAGACCGATTCGAGTTTGAAGGATGGAGATGGAAACTTCAGCGTTTGTAGCTCGTTAGGCGTGCCACAAACTGATGTCACGAATAGCAGCTTCAGTTTTTTGGGTGATAACTTTCTTCACAACGTGGATTCCATAGGATGTGAAGCTGATAGGAAAAGGGTTGTTCAAGAACAAACATCAGAGCCAAAAAGAGCTGCTGCTACTGAACTGATAAAGACACGGTGTACCCACATGAAATTCAACAACTCGTTTGCCTCTGTTGAATCTGAAGGCAAGTTAGTAGCATGTTACCCTTGGGTTGAAGCTCCACAGATGAAGCTCAAACAAGAAAGCAAGCCACATCAAGTTCAAATCAACCAACTACCATCGGTTTCGTCCATTAGTTCTGGACGGTCAGCAACAGAGAAAGACAAAGGAAGCTCCATTGAAAGTAAGGACTGTAGCCAACAAATGGTCCATCTAAACCCACCAAAACCTCCAACTGATTCGTTTTCTGGCAAGGCTAAGAGTTTCAATGAGATCAATGACCATTTTGAGCCTATTTCAACTGCTACTGCTCCATTGGGCGTGAAAAACCAGAATGTGATCGATCTTAGCAGCATTTCAACTGATTTAGGAAGTGGGTTTCCTTTTTCAAGCTTTGATGAAGATTTGCAGGGCTATTTGATTCAAGATGGTTGTTACCCAAAGAACCTTGAACAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGGTCCGACTCACCTTTATGATGCAATGAGGTTTGGCTATGAGTATTCCTATGACCCAACTGAGTATCCAGTGATAGATGAAGGCCTATTCATCGCATGA 2298 43.04 MYYRLSRSSCKDSLKVLEEDVNRANALAVAIPRAKHGSYLQMKLVYSQLAPLFLFLMQWVYTDGRPNLSAHGRKATLKDFYAVILPSLQRLQANARELDNAKEKRVGVEGDGKLSNGDVEREEECGICLEASTKMVLPNCCHSMCIKCYHNWNTRSESCPFCRGSLKRIKSEDLWVLTCSEDVVDTEKVSKEDLSRFIIMENGFSSPRSDVFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIKPSFLMYKFVFLHAVMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVFEGLQILRNGSDRYDDSQFLRVEELFSVRKRKDVDKYEEKEFGETCSTKKARVVWSVDLHQKFVEAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKQTDSSLKDGDGNFSVCSSLGVPQTDVTNSSFSFLGDNFLHNVDSIGCEADRKRVVQEQTSEPKRAAATELIKTRCTHMKFNNSFASVESEGKLVACYPWVEAPQMKLKQESKPHQVQINQLPSVSSISSGRSATEKDKGSSIESKDCSQQMVHLNPPKPPTDSFSGKAKSFNEINDHFEPISTATAPLGVKNQNVIDLSSISTDLGSGFPFSSFDEDLQGYLIQDGCYPKNLEQIIEFPDYGDPGIFTEGPTHLYDAMRFGYEYSYDPTEYPVIDEGLFIA 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 209888 216840 - CmoCh12G000370.1 Cmo12g00037 392725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00037 765 Gene3D - 216 391 - -
Cmo12g00037 765 SUPERFAMILY RING/U-box 118 169 - -
Cmo12g00037 765 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11 201 722 - -
Cmo12g00037 765 MobiDBLite consensus disorder prediction 594 619 - -
Cmo12g00037 765 ProSiteProfiles Response regulatory domain profile. 217 346 IPR001789 GO:0000160
Cmo12g00037 765 ProSiteProfiles Zinc finger RING-type profile. 125 163 IPR001841 -
Cmo12g00037 765 CDD REC_typeB_ARR-like 218 346 - -
Cmo12g00037 765 Pfam Myb-like DNA-binding domain 413 463 IPR001005 -
Cmo12g00037 765 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
Cmo12g00037 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 174 IPR013083 -
Cmo12g00037 765 SUPERFAMILY Homeodomain-like 409 468 IPR009057 -
Cmo12g00037 765 SUPERFAMILY CheY-like 215 353 IPR011006 -
Cmo12g00037 765 SMART REC_2 216 342 IPR001789 GO:0000160
Cmo12g00037 765 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 411 464 IPR006447 GO:0003677
Cmo12g00037 765 Gene3D - 407 470 - -
Cmo12g00037 765 MobiDBLite consensus disorder prediction 592 649 - -
Cmo12g00037 765 Pfam Response regulator receiver domain 218 341 IPR001789 GO:0000160
Cmo12g00037 765 Pfam Zinc finger, C3HC4 type (RING finger) 122 168 - -
Cmo12g00037 765 SMART ring_2 125 162 IPR001841 -
Cmo12g00037 765 PANTHER TWO-COMPONENT RESPONSE REGULATOR 201 722 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00069 Cmo-Chr5:252742 Cmo12g00037 Cmo-Chr12:209888 5.44E-115 dispersed
Cmo12g00037 Cmo-Chr12:209888 Cmo08g01225 Cmo-Chr8:7770459 2.46E-89 dispersed
Cmo05g00070 Cmo-Chr5:259045 Cmo12g00037 Cmo-Chr12:209888 0 transposed
Cmo12g00037 Cmo-Chr12:209888 Cmo18g00712 Cmo-Chr18:8951379 1.09E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10683 PF00072 Response_reg 8.90E-18 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00037 - K14491 csv:101204370 897.886