Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00042 ATGTACTTGTCTGATAAGCCTCGACCAATCGATATTTACAAAGAAGAAGGCAGCAGAGATATGATGATCGAGGTGGCTTCTAATGGCGACCATCATATTCAACCTCATCAGCCACAACAGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCGCCGAAGAAGCGGGCGGAGACTTGGGTTCAGGATGAGACGAGAAGCTTAATTTCACTACGGAGGGGGATGGATGGATTGTTCAATACCTCGAAATCGAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGAGGCTTTGATCGCTCTCCGACTATGTGTACTGATAAGTGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCTAAACACCACGACAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAATGCGCAGTACAAGAGCCCTACGCCGCCCAAGATTGATTCCTACATACAATTCTCAGACAAAGGAATTGAGGATAATGCTCTATCGTTTGGACCTGTCGAAGCTGGTGGCAGGCCCTCACTCAATCTTGAAAGACAGCTGGATCACGATGGGCATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACAGGCATCCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGGTGGGGAAGGTCAGGCATTTGGCGGGAGAGTTATAACAGTCAAGTGGGGAGACTACACAAGAAGAATCGGTGTTGATGGCACCTCAGAAGCCATCAAGGAGGCAATCAAGTCTGCATTTAGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTAGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGGTTGGCTGTTAAAATCTGCCTCTATGATGAATCTGACCACTTACCAGTACATACTGAAGAAAAAATATTTTACACTGAAGATGAGTACCGAGAATTTTTAGCTCGTCGGGCCTGGACATGCCTTCGGGAGTTTGATGGGTATAGAAACATCGATAATATGGATGATCTACGTCCTGGTGCATTATACCGCGGTGTAAGTTGA 1137 46.88 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQQTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRRGMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNAQYKSPTPPKIDSYIQFSDKGIEDNALSFGPVEAGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNGGEGQAFGGRVITVKWGDYTRRIGVDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGLAVKICLYDESDHLPVHTEEKIFYTEDEYREFLARRAWTCLREFDGYRNIDNMDDLRPGALYRGVS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 230221 234314 + CmoCh12G000420.1 Cmo12g00042 392730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00042 378 Gene3D - 69 131 - -
Cmo12g00042 378 Pfam Myb/SANT-like DNA-binding domain 68 152 IPR044822 -
Cmo12g00042 378 PANTHER - 5 377 - -
Cmo12g00042 378 CDD GT1 67 132 - -
Cmo12g00042 378 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 377 - -
Cmo12g00042 378 SMART sant 65 127 IPR001005 -
Cmo12g00042 378 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00042 Cmo-Chr12:230221 Cmo13g00415 Cmo-Chr13:5187491 5.70E-11 dispersed
Cmo12g00042 Cmo-Chr12:230221 Cmo05g00075 Cmo-Chr5:292932 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10684 PF13837 Myb_DNA-bind_4 9.40E-21 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00042 - - csv:101222888 696.041