Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00050 ATGGATATTACGGAGGTTGAGGAAAGTCTATTTGCAGCACGTGATGCCAAGCTACATGGAGGAATGTGCAAGGCTCTTTCTTCAATATATTGTAAAGCATCATCAATTTTCCCTTCATTGGAAGAAGCACGACCTCGGAGCAAATCTGGTATCCAGGCATTATGCTCGTTGCATGTGGCACTGGAAAAAGCCAAAAATACTCTCCTACATTGTACAGAGAGCAGCAAACTTTATTTGGCTATAACTGGGGACTCTGTCCTGTTGAAGTTTAAGAAGGTAAAATGTGCTCTACAGGATAGCCTTCAACGCGTTGAAGATATTGTTCCACAGTCAATTGGCCATCAGGTTCAGGAGATTATGAAGGAACTGGATAGTACTCAATTTTTCCTAGACCCTTTGGAGAAGCAAGTTGGTGAGGACATTATTGTATTGCTCCAACGAGGACGAACATTTAGCAACACTGTTGACAACAATGAGCTTGAGACTTTTCACCAAGCTGCTATAAGACTTGGAATAAACTCCTCTAGAGCAGCTCTTGCAGAGAGAAGAGCACTAAAGAAACTAATAGATCGATCTCGCACTGAAGAGGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCTGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTCGAGGACAGTGGACCTGGTGGAAATGGACAAGCCTTTGAAAGGCAGCTAACAAAGCTTGGTACTTTTAACATGAAGCCAACAAATCTCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATACGAAAGGATTTGCATAGAGAAGTGGTTAAGTGATGGGCATAACACCTGCCCAAAAACTCAACAGAAACTTTCTCATTTTTCATTGACGCCAAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGAATGGAGTTCCTGCTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTATCCGAATCAGTGTCTCTAAATTCGTCGCCTGTGGACACAGTTGGTTCTTGTAAGTTGAAAGATGCTAAATTTGATCTGGTTGAAGAAAAGGGTACAACCGAGGAGATCAAAGAAAATGTAGTGGATGACAACTCTGCTGAAGACCAGGAGTCCGTCACAAATATGCTTATTAGATACGAACAGTATTTGAAAGTTTTGAATGAAGAAGCTGACTTGAGGAAAAAGTTGGAAGTTGTGGAGCAAATAAGACTGTTGCTCAAGGATGATGACGAGGCGAGGATTCTTATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGCTACTTGGAGAGAGCTGTGCAAGAACAAGATGTTAAGGCTCAGGAAAGTGCAGCAATGGCTCTTTTCAACCTTGCAGTCAACAACGACAGGAACAAGGAAATAATGCTGGCAGAAGGTGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAGATTGCCACGGATCTGCAACGGCCCTTTATCTCAATGTCTCCTGTCTGGAAGAAGCCAAATCTATTATCGGCTCAAGTTGTGCAGTCCCGTTCTTGACTCAACTCCTCCACACTGATACTGAAACACTATGCAAACTTGATGCACTTCACACACTTTACAATCTCTCAACCGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAGGGGACTTCAATCCCTTCTTGCTGCCCCTCTTGGTCGAACATGGACCGAAAAGTGCATAGCTATCTCCATAAATTTGGCTTCAGATGAATCAGGTATAGATCAAATGGCATCTACTCCAGAACTCATCAGTGGGTTGGCAGCAATATTAGACAATGGCGAATCCATTGAGCAGGAACAAGCAGTTGCTTGTCTCTTGATTCTTTGCAACGGGAGTGAGAGGTGCAGTGAGATGGTGCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATATCTGTGAATGGGACAGCAAGAGGCAAAGAGAAGGCTCAAAAGCTTCTGATGTTGTTCAGAGTGCAACGACAACAGGAGCCACCAGCACCAACACCAACACCGTCACCAACACCAACACCAACACCAACACCGTCACCGACACCGACACCAACACGAACACCGGCACCAACACGGAAACCATCACTGAAACTGACGAAACGATCGGAGAGTAGCGGGACATCCATGCCTGTGGCGGAATCAAAGCCACTGTGCAAGACAATTACAAGAAAAAAATCAATAAGAGCTTTCAGCTTTTTATGGAAAACCAAAGGCTGTTCAGTGTACCAATGA 2394 44.4 MDITEVEESLFAARDAKLHGGMCKALSSIYCKASSIFPSLEEARPRSKSGIQALCSLHVALEKAKNTLLHCTESSKLYLAITGDSVLLKFKKVKCALQDSLQRVEDIVPQSIGHQVQEIMKELDSTQFFLDPLEKQVGEDIIVLLQRGRTFSNTVDNNELETFHQAAIRLGINSSRAALAERRALKKLIDRSRTEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGGNGQAFERQLTKLGTFNMKPTNLRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHFSLTPNYCVKGLIANWCEQNGVPAPDGPPDSLDLNYWRLSESVSLNSSPVDTVGSCKLKDAKFDLVEEKGTTEEIKENVVDDNSAEDQESVTNMLIRYEQYLKVLNEEADLRKKLEVVEQIRLLLKDDDEARILMGANGFVQGLLRYLERAVQEQDVKAQESAAMALFNLAVNNDRNKEIMLAEGVISLLEEMIMNPDCHGSATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHTDTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIRGLQSLLAAPLGRTWTEKCIAISINLASDESGIDQMASTPELISGLAAILDNGESIEQEQAVACLLILCNGSERCSEMVLQEGVIPGLVSISVNGTARGKEKAQKLLMLFRVQRQQEPPAPTPTPSPTPTPTPTPSPTPTPTRTPAPTRKPSLKLTKRSESSGTSMPVAESKPLCKTITRKKSIRAFSFLWKTKGCSVYQ 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 263478 268383 - CmoCh12G000500.1 Cmo12g00050 392738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00050 797 MobiDBLite consensus disorder prediction 715 743 - -
Cmo12g00050 797 MobiDBLite consensus disorder prediction 224 247 - -
Cmo12g00050 797 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cmo12g00050 797 SMART arm_5 502 541 IPR000225 GO:0005515
Cmo12g00050 797 SMART arm_5 457 501 IPR000225 GO:0005515
Cmo12g00050 797 SMART arm_5 542 583 IPR000225 GO:0005515
Cmo12g00050 797 SUPERFAMILY ARM repeat 393 707 IPR016024 -
Cmo12g00050 797 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 751 - -
Cmo12g00050 797 SUPERFAMILY RING/U-box 279 355 - -
Cmo12g00050 797 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cmo12g00050 797 Gene3D - 611 707 IPR011989 -
Cmo12g00050 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Cmo12g00050 797 MobiDBLite consensus disorder prediction 221 253 - -
Cmo12g00050 797 MobiDBLite consensus disorder prediction 712 767 - -
Cmo12g00050 797 Gene3D - 429 610 IPR011989 -
Cmo12g00050 797 PANTHER U BOX DOMAIN-CONTAINING 1 751 - -
Cmo12g00050 797 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cmo12g00050 797 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cmo12g00050 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00050 Cmo-Chr12:263478 Cmo16g00674 Cmo-Chr16:3336796 2.63E-90 dispersed
Cmo12g00050 Cmo-Chr12:263478 Cmo18g00698 Cmo-Chr18:8845107 0 wgd
Cmo12g00050 Cmo-Chr12:263478 Cmo04g01920 Cmo-Chr4:9795617 0 wgd
Cmo12g00050 Cmo-Chr12:263478 Cmo05g00089 Cmo-Chr5:359746 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00050 - - cpep:111798982 1480.69