Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00074 ATGGACCGCGATCCTCCGCCGAACTTCTCCACCGCCGATTCCTCCACTAACTGGACCAGCTCTTCACTCGCCTCTGCCTCCGTCGACGCTGATTACCTTCTCTCCGGCGATAGCGAAACCACTATCCTCACTGAATTCGGATGGAATTTCGACTCCGATGAAGTTCAGCCTTCTCGATTTCTCGACTCCGACCAGATCGCCACCGATTACAACGCCGATTTTGCCGGAACCTCCACCGGCAGTCTACAGAGCCCTGACGTTCCTGTTCCGCTTGCCTCCAATCCTTCATTGTCTTCGAGCTCGAGCGGAGAGCCGCCAGAGAAACAGCCTGAGATTCCGCGGAATAAGGTAAAAAAGAAGGGGCAAAAGCGAATCCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTGGATCATCTTGAAGATGGCTACCGTTGGAGGAAATATGGTCAAAAGGCTGTCAAAAATAGTCCATTTCCCAGGAGTTATTATAGGTGCACCAACAGCAAATGCACCGTGAAGAAAAGGGTAGAACGCTCGTCTGAAGATCCAACGGTTGTGATTACAACTTACGAAGGCCAACACTGTCATCACACCGTTGGATTCCCTCGTGGAGGAGGACTCAACATGGCTCATGAACCTGCTTTTGGGACTCAATTTTCCCCTCATATGGCTCAGTTCTTTTACCCTGAACCTCACCCACCGCCCACAATTACCCCTCCAAATGCTCCCAATTTGCCATCAGTGGCACCGTCCCAAGCAGAGCCTACAAATTCTTCACCCCAAGTGGCTTCGGATGAGGGCTTACTAGGCGACGTTGTGGCGCCAGGCATGCGTAGAAGATGA 849 51.94 MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDSETTILTEFGWNFDSDEVQPSRFLDSDQIATDYNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIPRNKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTVVITTYEGQHCHHTVGFPRGGGLNMAHEPAFGTQFSPHMAQFFYPEPHPPPTITPPNAPNLPSVAPSQAEPTNSSPQVASDEGLLGDVVAPGMRRR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 398380 401792 - CmoCh12G000740.1 Cmo12g00074 392762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00074 282 Gene3D WRKY domain 128 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo12g00074 282 Pfam WRKY DNA -binding domain 142 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo12g00074 282 MobiDBLite consensus disorder prediction 72 106 - -
Cmo12g00074 282 MobiDBLite consensus disorder prediction 230 248 - -
Cmo12g00074 282 MobiDBLite consensus disorder prediction 249 266 - -
Cmo12g00074 282 SMART WRKY_cls 141 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo12g00074 282 MobiDBLite consensus disorder prediction 230 282 - -
Cmo12g00074 282 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 212 IPR044810 GO:0003700
Cmo12g00074 282 MobiDBLite consensus disorder prediction 72 126 - -
Cmo12g00074 282 ProSiteProfiles WRKY domain profile. 136 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo12g00074 282 MobiDBLite consensus disorder prediction 1 21 - -
Cmo12g00074 282 SUPERFAMILY WRKY DNA-binding domain 133 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo12g00074 282 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 15 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00287 Cmo-Chr1:1364234 Cmo12g00074 Cmo-Chr12:398380 9.85E-46 dispersed
Cmo08g01254 Cmo-Chr8:7916221 Cmo12g00074 Cmo-Chr12:398380 4.57E-45 dispersed
Cmo11g01607 Cmo-Chr11:11508531 Cmo12g00074 Cmo-Chr12:398380 4.71E-19 dispersed
Cmo12g00074 Cmo-Chr12:398380 Cmo17g00367 Cmo-Chr17:2255107 5.27E-54 dispersed
Cmo20g01135 Cmo-Chr20:11017198 Cmo12g00074 Cmo-Chr12:398380 4.38E-36 dispersed
Cmo03g00431 Cmo-Chr3:4953368 Cmo12g00074 Cmo-Chr12:398380 5.46E-23 transposed
Cmo12g00074 Cmo-Chr12:398380 Cmo05g00464 Cmo-Chr5:2164305 2.72E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10686 PF03106 WRKY 2.50E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00074 - - cmo:103488478 294.664