Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo12g00074 | ATGGACCGCGATCCTCCGCCGAACTTCTCCACCGCCGATTCCTCCACTAACTGGACCAGCTCTTCACTCGCCTCTGCCTCCGTCGACGCTGATTACCTTCTCTCCGGCGATAGCGAAACCACTATCCTCACTGAATTCGGATGGAATTTCGACTCCGATGAAGTTCAGCCTTCTCGATTTCTCGACTCCGACCAGATCGCCACCGATTACAACGCCGATTTTGCCGGAACCTCCACCGGCAGTCTACAGAGCCCTGACGTTCCTGTTCCGCTTGCCTCCAATCCTTCATTGTCTTCGAGCTCGAGCGGAGAGCCGCCAGAGAAACAGCCTGAGATTCCGCGGAATAAGGTAAAAAAGAAGGGGCAAAAGCGAATCCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTGGATCATCTTGAAGATGGCTACCGTTGGAGGAAATATGGTCAAAAGGCTGTCAAAAATAGTCCATTTCCCAGGAGTTATTATAGGTGCACCAACAGCAAATGCACCGTGAAGAAAAGGGTAGAACGCTCGTCTGAAGATCCAACGGTTGTGATTACAACTTACGAAGGCCAACACTGTCATCACACCGTTGGATTCCCTCGTGGAGGAGGACTCAACATGGCTCATGAACCTGCTTTTGGGACTCAATTTTCCCCTCATATGGCTCAGTTCTTTTACCCTGAACCTCACCCACCGCCCACAATTACCCCTCCAAATGCTCCCAATTTGCCATCAGTGGCACCGTCCCAAGCAGAGCCTACAAATTCTTCACCCCAAGTGGCTTCGGATGAGGGCTTACTAGGCGACGTTGTGGCGCCAGGCATGCGTAGAAGATGA | 849 | 51.94 | MDRDPPPNFSTADSSTNWTSSSLASASVDADYLLSGDSETTILTEFGWNFDSDEVQPSRFLDSDQIATDYNADFAGTSTGSLQSPDVPVPLASNPSLSSSSSGEPPEKQPEIPRNKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTVVITTYEGQHCHHTVGFPRGGGLNMAHEPAFGTQFSPHMAQFFYPEPHPPPTITPPNAPNLPSVAPSQAEPTNSSPQVASDEGLLGDVVAPGMRRR | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 398380 | 401792 | - | CmoCh12G000740.1 | Cmo12g00074 | 392762 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo12g00074 | 282 | Gene3D | WRKY domain | 128 | 194 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo12g00074 | 282 | Pfam | WRKY DNA -binding domain | 142 | 198 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo12g00074 | 282 | MobiDBLite | consensus disorder prediction | 72 | 106 | - | - | |
Cmo12g00074 | 282 | MobiDBLite | consensus disorder prediction | 230 | 248 | - | - | |
Cmo12g00074 | 282 | MobiDBLite | consensus disorder prediction | 249 | 266 | - | - | |
Cmo12g00074 | 282 | SMART | WRKY_cls | 141 | 200 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo12g00074 | 282 | MobiDBLite | consensus disorder prediction | 230 | 282 | - | - | |
Cmo12g00074 | 282 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 15 | 212 | IPR044810 | GO:0003700 | |
Cmo12g00074 | 282 | MobiDBLite | consensus disorder prediction | 72 | 126 | - | - | |
Cmo12g00074 | 282 | ProSiteProfiles | WRKY domain profile. | 136 | 201 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo12g00074 | 282 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo12g00074 | 282 | SUPERFAMILY | WRKY DNA-binding domain | 133 | 199 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo12g00074 | 282 | PANTHER | WRKY TRANSCRIPTION FACTOR 57-RELATED | 15 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00287 | Cmo-Chr1:1364234 | Cmo12g00074 | Cmo-Chr12:398380 | 9.85E-46 | dispersed | |
Cmo08g01254 | Cmo-Chr8:7916221 | Cmo12g00074 | Cmo-Chr12:398380 | 4.57E-45 | dispersed | |
Cmo11g01607 | Cmo-Chr11:11508531 | Cmo12g00074 | Cmo-Chr12:398380 | 4.71E-19 | dispersed | |
Cmo12g00074 | Cmo-Chr12:398380 | Cmo17g00367 | Cmo-Chr17:2255107 | 5.27E-54 | dispersed | |
Cmo20g01135 | Cmo-Chr20:11017198 | Cmo12g00074 | Cmo-Chr12:398380 | 4.38E-36 | dispersed | |
Cmo03g00431 | Cmo-Chr3:4953368 | Cmo12g00074 | Cmo-Chr12:398380 | 5.46E-23 | transposed | |
Cmo12g00074 | Cmo-Chr12:398380 | Cmo05g00464 | Cmo-Chr5:2164305 | 2.72E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10686 | PF03106 | WRKY | 2.50E-25 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo12g00074 | - | - | cmo:103488478 | 294.664 |