Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00080 ATGTCTTCGTCCGAGAAGGAGAGAGAGACACAGGTCTACTTGGCCAAGCTCGCCGAGCAGGCAGAGCGCTATGACGAAATGGTTGAGTGTATGAAGAATATTGCAAAGCTTGATCTCGAACTAACTGTGGAGGAGAGGAACCTTCTTTCTGTCGGGTACAAAAATGTCATAGGTGCACGACGAGCCTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGACCAAGGGAAATGAAGGCATTGTAAAATTGATAAAGGGTTACCGCCAGAAAGTAGAGGAGGAACTTTCAAAGATTTGTGGTGATATTCTCTCTATCATAGACAAGCATCTAATCCCCCATTCGTCCTCTGCAGAAGCCACTGTCTTCTACTACAAGATGAAAGGTGACTACTTTCGCTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAAGCTGCTGATCAGTCATTGAAGGGATATGAGGCTGCCTCAAGCACTGCGAATACTGAACTCCCATCAACCCACCCCATCCGGCTTGGCCTTGCTCTCAATTTTTCTGTCTTCTACTACGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTAGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTAATCATGCAACTGTTGAGAGACAACCTCACCCTCTGGACCTCAGATTTGCCTGAAGACGGCGGTGAAGAGAACGTCAAAGCTGAGGATTCCAAGCCTGTTGAACCTGAGCCCCAGCAAGCGAAATGA 795 46.16 MSSSEKERETQVYLAKLAEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEETKGNEGIVKLIKGYRQKVEEELSKICGDILSIIDKHLIPHSSSAEATVFYYKMKGDYFRYLAEFKTDQDRKEAADQSLKGYEAASSTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENVKAEDSKPVEPEPQQAK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 434239 437188 - CmoCh12G000800.1 Cmo12g00080 392768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00080 264 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Cmo12g00080 264 PANTHER 14-3-3 PROTEIN 4 257 IPR000308 -
Cmo12g00080 264 MobiDBLite consensus disorder prediction 242 258 - -
Cmo12g00080 264 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Cmo12g00080 264 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Cmo12g00080 264 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Cmo12g00080 264 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Cmo12g00080 264 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Cmo12g00080 264 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Cmo12g00080 264 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Cmo12g00080 264 Coils Coil 196 216 - -
Cmo12g00080 264 SMART 1433_4 8 249 IPR023410 -
Cmo12g00080 264 PIRSF 14-3-3 2 249 IPR000308 -
Cmo12g00080 264 MobiDBLite consensus disorder prediction 237 264 - -
Cmo12g00080 264 Pfam 14-3-3 protein 14 236 IPR023410 -
Cmo12g00080 264 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Cmo12g00080 264 Coils Coil 14 34 - -
Cmo12g00080 264 PANTHER BNAC03G57490D PROTEIN 4 257 - -
Cmo12g00080 264 Gene3D - 1 250 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01966 Cmo-Chr11:13528927 Cmo12g00080 Cmo-Chr12:434239 7.05E-125 dispersed
Cmo12g00080 Cmo-Chr12:434239 Cmo19g01060 Cmo-Chr19:9198427 7.49E-145 dispersed
Cmo04g01782 Cmo-Chr4:8966872 Cmo12g00080 Cmo-Chr12:434239 9.23E-179 transposed
Cmo12g00080 Cmo-Chr12:434239 Cmo05g00474 Cmo-Chr5:2214382 7.72E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00080 - K06630 csv:101221858 499.975